Gene detail

Detail information of GWHGAAEX011801/evm.TU.scaffold_4.115

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|472321483\|ref\|YP_007671003.1\|	2.00E-30	dTDP-4-dehydrorhamnose reductase [Polaribacter sp. MED152]
KOG	KOG1430	3.00E-87	C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases
nr	gi\|743831981\|ref\|XP_010934853.1\|	2.65E-168	PREDICTED: methionine adenosyltransferase 2 subunit beta isoform X2 [Elaeis guineensis]
trEMBL	tr\|M0TEM6\|M0TEM6_MUSAM	1.00E-164	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P04360_001}
TAIR	AT4G00560	3.00E-87	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	2368828	2401897	-

Transcript Sequence
>GWHTAAEX011801 GAAAGCGAGGACATTGCGATAATTTCGTCAGGAGCAGTTGTGTTCCTTCTACAGAGCGAGGGAGAAGAAAATGGTGGAGAGGAAGCGCATTCTCATTGTAGGAGGAAGCGGTTATCTAGGGCAACACTTACTCGTCGGTCTCACTACTTCCGACGGCGAGCCTCCTTACGATTTGGCTTTCACTTACCGTCGTCCACTCCCTCCTCCGGAGCTGATCGACGCCATCTTTCCGGTTCTTTCCTTCCGCGTCGATCTTGGTACTGGCGAAGGCTTCGAACTCATCACAGATACCTTCGGAAAGCCAGACGTGGTTGTTAATTGTGCTGCACTCTCTGTTCCTCGAGCATGTGAAGAGGATCCAGCTGCAGCCATGGCTACTAACCTGCCCAGTTCTCTTGTCAACTGGTTATCAACCTTCAGCAACAACAATATTTTGTTAATTCATCTATCCACTGATCAAGTTTACGGTGGGTCTAAATCATTCTACAAAGAAGCAGATACGGCAGCTCCAGTGAACGTATATGGTAAATCTAAAGTGGCAGCCGAGCAGTTTATTTCAAAACATTGTTCAAACTTTTCCATTTTGCGTAGTAGTATAATCTATGGGCCACAAACAATATCTCCTGTTTCAAAACCTCTTCCTGTACAGTGGATCGATGATAAACTATTGCTCAATGAAGAAGTAGAATTTTTCCATGATGAGTTTCGGTGTCCTGTTTATGTTAAAGATGTCGTCAGTGTTATATTAACACTGATAAAACAATGGGTATCAGATGGTAAGCCATTGAATTTAGTTATAAATGTTGGCGGACCTGATAGATTGTCGAGGGCACAGATGGCAGAAACAGTCGCCAACTATCGAGGCTATGATCACTCTCTGATTAAACCAGTATCTGCGTCATCTATTAATCGTGGAGTTGTGTTTCCAGCAGATATATCAATGGACATCACCAGATTAATTCAGGCGCTGGGGATCATTCCTATTTCATTCAAGGATGGTGTCAAACTGACTCTTGAAACTAGTTCACGAGTTTGTAATTTCATAGAAAATGCAGTTTGTTCTCAAATTGATTAATGATTTAAAAAGGCTCAGATGATATGCATGCTTTGACAATAGAGTATCTGGAAGGAAAACTGCTTATTTTAATATATTAGTAAGTTGGAGTTGTAACATTGCCTATAATTTGCATCTCAACATTCAATTTTCTTGTAATTATAATGTTAGGCCTTAAAAAGTAAGAACGATGTGGCCTTTGGGAGCTCTGAAGGAAGCATGTGAGGCTATATCTCTTGCTCATTTAAAATGCTGCACTAGCAATTAATCAGTCATACATCATTAGAAAAATTGTAATCATACATCAGATATCATCACATGCATCCTTATTGTAGTCTTGAAAGTATGTTAGGTTTATTAATACTATTTAGTCTAATCCCAC

Network for GWHGAAEX011801

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04321.16	RmlD_sub_bind	6	317	8.70E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.830
SRP064423	SRR2545915	Juvenile tuber	13.060
SRP108465	SRR5643513	five period of Gastrodia elata	6.580
	SRR5643514	five period of Gastrodia elata	6.420
	SRR5643515	five period of Gastrodia elata	5.650
	SRR5643524	five period of Gastrodia elata	5.400
	SRR5643525	five period of Gastrodia elata	3.750
	SRR5643528	five period of Gastrodia elata	1.630
	SRR5643658	five period of Gastrodia elata	3.200
	SRR5643659	five period of Gastrodia elata	3.300
	SRR5643660	five period of Gastrodia elata	4.520
	SRR5643661	five period of Gastrodia elata	4.710
	SRR5643662	five period of Gastrodia elata	2.310
	SRR5643663	five period of Gastrodia elata	2.040
	SRR5643664	five period of Gastrodia elata	1.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.460
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.280
SRP279888	Gastro	Gastrodia elata tuber	6.20
	Juven	Juvenile tuber	3.95
	Mother_Gastro	Mother tuber of Gastrodia elata	4.07
	Mother_Juven	Mother tuber of Juvenile	4.43