Detail information of GWHGAAEX011803/evm.TU.scaffold_4.117
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-110 | FOG: PPR repeat |
| nr | gi|743831568|ref|XP_010934731.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Elaeis guineensis] |
| Swissprot | tr|Q9LS72|PP261_ARATH | 4.00E-111 | Pentatricopeptide repeat-containing protein At3g29230 |
| trEMBL | tr|A0A061G1Y3|A0A061G1Y3_THECC | 6.00E-173 | Tetratricopeptide repeat superfamily protein, putative {ECO:0000313|EMBL:EOY23172.1} |
| TAIR | AT3G29230 | 1.00E-110 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 2480352 | 2482527 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011803
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 75 | 115 | 1.90E-07 |
| PF01535.19 | PPR | 177 | 203 | 0.00019 |
| PF01535.19 | PPR | 206 | 236 | 1.70E-07 |
| PF13041.5 | PPR_2 | 266 | 313 | 3.30E-10 |
| PF13041.5 | PPR_2 | 366 | 407 | 2.70E-07 |
| PF12854.6 | PPR_1 | 434 | 465 | 3.30E-08 |
| PF01535.19 | PPR | 507 | 535 | 0.25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.130 |
| SRR2545915 | Juvenile tuber | 8.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.000 |
| SRR5643514 | five period of Gastrodia elata | 9.410 | |
| SRR5643515 | five period of Gastrodia elata | 9.090 | |
| SRR5643524 | five period of Gastrodia elata | 7.950 | |
| SRR5643525 | five period of Gastrodia elata | 16.870 | |
| SRR5643528 | five period of Gastrodia elata | 12.650 | |
| SRR5643658 | five period of Gastrodia elata | 13.550 | |
| SRR5643659 | five period of Gastrodia elata | 11.540 | |
| SRR5643660 | five period of Gastrodia elata | 12.380 | |
| SRR5643661 | five period of Gastrodia elata | 14.350 | |
| SRR5643662 | five period of Gastrodia elata | 11.650 | |
| SRR5643663 | five period of Gastrodia elata | 11.410 | |
| SRR5643664 | five period of Gastrodia elata | 31.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.760 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.270 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.21 |
| Juven | Juvenile tuber | 7.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.62 | |
| Mother_Juven | Mother tuber of Juvenile | 4.12 |