Detail information of GWHGAAEX011807/evm.TU.scaffold_4.121


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG25600RNA splicing factor - Slu7p
nrgi|672123757|ref|XP_008785246.1|0PREDICTED: pre-mRNA-splicing factor SLU7 [Phoenix dactylifera]
Swissprottr|Q6ZK48|SLU7_ORYSJ0Pre-mRNA-splicing factor SLU7
trEMBLtr|A0A0A0LFN9|A0A0A0LFN9_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN60870.1}
TAIRAT1G656600Pre-mRNA splicing Prp18-interacting factor

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001125376412555834+
Transcript Sequence

Network for GWHGAAEX011807

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11708.7Slu71364053.70E-94
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12819SLU7 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms63.470
SRR2545915Juvenile tuber69.920
SRP108465SRR5643513five period of Gastrodia elata34.240
SRR5643514five period of Gastrodia elata28.430
SRR5643515five period of Gastrodia elata31.730
SRR5643524five period of Gastrodia elata28.780
SRR5643525five period of Gastrodia elata39.470
SRR5643528five period of Gastrodia elata41.470
SRR5643658five period of Gastrodia elata36.970
SRR5643659five period of Gastrodia elata33.990
SRR5643660five period of Gastrodia elata39.470
SRR5643661five period of Gastrodia elata34.120
SRR5643662five period of Gastrodia elata38.490
SRR5643663five period of Gastrodia elata36.020
SRR5643664five period of Gastrodia elata34.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.700
SRR6049655Rhizomagastrodiae_C368-T10_good_128.340
SRR6049656Rhizomagastrodiae_C368-T07_good_135.210
SRR6049657Rhizomagastrodiae_C368-T07_good_133.310
SRR6049658Rhizomagastrodiae_C368-T04_good_146.760
SRR6049659Rhizomagastrodiae_C368-T04_good_150.190
SRR6049660Rhizomagastrodiae_C368-T01_good_139.390
SRR6049661Rhizomagastrodiae_C368-T04_good_143.080
SRR6049662Rhizomagastrodiae_C368-T01_good_134.040
SRR6049663Rhizomagastrodiae_C368-T01_good_138.720
SRR6049664Rhizomagastrodiae_C368-T10_good_133.150
SRR6049665Rhizomagastrodiae_C368-T10_good_133.150
SRP279888GastroGastrodia elata tuber 53.50
JuvenJuvenile tuber31.68
Mother_GastroMother tuber of Gastrodia elata 38.56
Mother_JuvenMother tuber of Juvenile 37.78