Gene detail

Detail information of GWHGAAEX011812/evm.TU.scaffold_4.126

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1886	4.00E-160	BAH domain proteins
nr	gi\|743831705\|ref\|XP_010934774.1\|	0	PREDICTED: uncharacterized protein LOC105054856 [Elaeis guineensis]
trEMBL	tr\|M0S0Q5\|M0S0Q5_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P17470_001}
TAIR	AT4G11560	4.00E-160	bromo-adjacent homology (BAH) domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	2614086	2642143	-

Transcript Sequence
>GWHTAAEX011812 ATGGGAAAACGGCGGATCGCCCAAGTTTCTAGTGATGAGGAAGAACCCTCGCCGCCGTCAGATGACCGGCGCCGGCGAAAACAACGGCGTCTCCGACACGTTGATGACGACGACGAAGCCGACATGAATAAGAATCGCTCCACTACGAATAGCGGAGATGCTTGCAATGAAGTTGAGGAAGAGCAGAGCGAAGCGGAGGCGGATGAGGACGAGGAGGCGAAGCCGGAGCCGGTTGGAGAAATTTTGAAGGTCACTGGAAAGGGCAAGAAGAAGAAGAACCATTACGGTTCGTTTGAGTTCGAGGGGAATGTATTTGAACTGGAGGATTCGGTTCTGTTGACGCCCGAAGATTCGAAGCAGAAACCGTATGTTGCGATCATTAAAGACATTGCTGAAGTTGCTGATGGGAATTTTATAGTAACCGGGCAATGGTTCTACAGACCCGAAGAAGCTGAGAAAAAAGGTGGGGGAAGCTGGCAGGCCAGCGATACCAGAGAGCTTTTTTACAGCTTCCATCGTGATAACGTCCCAGCTGAATCTGTTATGCACAAGTGCGTTGTACATTTTGTCCCTCTTAATAAAAAGTTGCCAATCCGGTCTCAGCACCCGGGCTTTATTGTACAGAAAGTGTATGATACTGTAGAGAAAAAACTTTGGAAATTGACTGATAAAGATTATGAAGATGGAAAACAGCATGAAATTGACCTTCTAGTTCAAAAAACACGGGAGCGTTTAGGGGAGCTTCCAGATCTTGATCCTGAAGAACTTTCGGGTGAGCAGCATGATCAGGCACATCTGCCAGCTCCAGCTACTCAAGTGACAAGTAAATGGAATCTCAGGAGGAAGCTGATGCCCTCTATTGATGCACAAAGAGTTGATGGTGTAAGTACTAGGTTTGATAGTGCACTCAAAGCAGAAACACCTGGTAGTAGTCCTGGTGACCTTTTAGAATATGATGCAATCTTAAAAAAATTTAATGCCTTGACAAGAGATTCACACCGGGATAAGTGGTTAAAGAAACTTTTGCAAGCTATTCAAACATCATGCAAGGACTTTGTTCCAACTTCTGATCAAAATGCAGTTCGCCATTTGAATAGTTTGTCAAATGCTTCTGAAAAAGTTTACTGGCCAGATGCAGCTGTCTTTGCCGTTACTGCGCTTGAGAAAGCTTCACATGAACTTCTTGGATCTGATTTTCAGAAATACAATCAGAAAATGAGGCAACTGGCATATAATCTCAAGAACAAATTAGCTGAACGTGTACTGAACGAAGAATTGGAGCCTTCTGTTGTTTTGACTATGACACCTGATGAATTGAAGGAAGGTTTAACAGTTGCAGAAAGGGCTTCGAAGGAACCTGAGAAGACAAAACAAATGCAGATGACTGATGCCCGTTGTTCAAGATGCTCTAAGAAAGAAGTTGGTGTGGCTGACATCATTCATGCTGGAGGACACGGTGACAGATACCAGCTGGAGTGCATTGCGTGCGGGTACACCTGGTATGCCTCGCGAGACGCAATTTCATCTTTGACGATCGATACTCCAAACCTAACAGGGAACGTCGGCGCCGCGCCGTGGGCCACCGCCAAGTTCGAGGAAGTTGAGAAGCTGCTGGTGAGCCCCCGCGATTCCGAAAAATCGGTCGCCAATCTTTTTCACAAGTCGACTGCCGTCTATATCCCCGTTCTAGAGCCTCAAAAATCGTTCGGCAGATCGAAACCTCAGGAAGCACACGAAGCCTCAGCTGCAACTGTTGAACTCTAG

Network for GWHGAAEX011812

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01426.17	BAH	105	220	2.30E-14
PF07500.13	TFIIS_M	331	459	2.60E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003682	Molecular Function	chromatin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.950
SRP064423	SRR2545915	Juvenile tuber	53.890
SRP108465	SRR5643513	five period of Gastrodia elata	27.160
	SRR5643514	five period of Gastrodia elata	29.430
	SRR5643515	five period of Gastrodia elata	24.650
	SRR5643524	five period of Gastrodia elata	26.990
	SRR5643525	five period of Gastrodia elata	41.480
	SRR5643528	five period of Gastrodia elata	37.480
	SRR5643658	five period of Gastrodia elata	44.190
	SRR5643659	five period of Gastrodia elata	30.930
	SRR5643660	five period of Gastrodia elata	41.860
	SRR5643661	five period of Gastrodia elata	36.260
	SRR5643662	five period of Gastrodia elata	36.020
	SRR5643663	five period of Gastrodia elata	34.000
	SRR5643664	five period of Gastrodia elata	41.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	61.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.710
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.710
SRP279888	Gastro	Gastrodia elata tuber	47.29
	Juven	Juvenile tuber	39.20
	Mother_Gastro	Mother tuber of Gastrodia elata	26.71
	Mother_Juven	Mother tuber of Juvenile	31.77