Detail information of GWHGAAEX011813/evm.TU.scaffold_4.127


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|186681150|ref|YP_001864346.1|8.00E-08hypothetical protein Npun_R0649 [Nostoc punctiforme PCC 73102]
KOGKOG41970FOG: PPR repeat
nrgi|672128080|ref|XP_008787518.1|0PREDICTED: pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Phoenix dactylifera]
Swissprottr|Q9LER0|PP381_ARATH0Pentatricopeptide repeat-containing protein At5g14770, mitochondrial (Precursor)
trEMBLtr|V4TGC8|V4TGC8_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR50640.1}
TAIRAT5G147700Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001126520272655014-
Transcript Sequence

Network for GWHGAAEX011813

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12854.6PPR_11251531.30E-08
PF13041.5PPR_21572041.00E-11
PF13041.5PPR_22272755.40E-14
PF13041.5PPR_22963443.70E-18
PF01535.19PPR3683980.0052
PF13041.5PPR_24014491.10E-07
PF13041.5PPR_24715195.60E-15
PF01535.19PPR5445730.0028
PF13041.5PPR_26466932.10E-16
PF01535.19PPR7547831.10E-05
PF13041.5PPR_27868332.60E-14
PF12854.6PPR_18518796.80E-06
PF13041.5PPR_28909348.10E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.410
SRR2545915Juvenile tuber30.180
SRP108465SRR5643513five period of Gastrodia elata12.630
SRR5643514five period of Gastrodia elata15.770
SRR5643515five period of Gastrodia elata13.620
SRR5643524five period of Gastrodia elata13.690
SRR5643525five period of Gastrodia elata10.780
SRR5643528five period of Gastrodia elata8.500
SRR5643658five period of Gastrodia elata10.640
SRR5643659five period of Gastrodia elata27.870
SRR5643660five period of Gastrodia elata27.100
SRR5643661five period of Gastrodia elata22.100
SRR5643662five period of Gastrodia elata20.940
SRR5643663five period of Gastrodia elata26.640
SRR5643664five period of Gastrodia elata24.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.770
SRR6049655Rhizomagastrodiae_C368-T10_good_113.260
SRR6049656Rhizomagastrodiae_C368-T07_good_122.910
SRR6049657Rhizomagastrodiae_C368-T07_good_118.950
SRR6049658Rhizomagastrodiae_C368-T04_good_119.360
SRR6049659Rhizomagastrodiae_C368-T04_good_118.260
SRR6049660Rhizomagastrodiae_C368-T01_good_122.720
SRR6049661Rhizomagastrodiae_C368-T04_good_123.150
SRR6049662Rhizomagastrodiae_C368-T01_good_118.190
SRR6049663Rhizomagastrodiae_C368-T01_good_117.330
SRR6049664Rhizomagastrodiae_C368-T10_good_114.280
SRR6049665Rhizomagastrodiae_C368-T10_good_114.280
SRP279888GastroGastrodia elata tuber 39.26
JuvenJuvenile tuber25.68
Mother_GastroMother tuber of Gastrodia elata 4.87
Mother_JuvenMother tuber of Juvenile 8.68