Detail information of GWHGAAEX011816/evm.TU.scaffold_4.130


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|283781061|ref|YP_003371816.1|0dihydroxy-acid dehydratase [Pirellula staleyi DSM 6068]
KOGKOG24480Dihydroxy-acid dehydratase
nrgi|695017005|ref|XP_009395426.1|0PREDICTED: putative dihydroxy-acid dehydratase, mitochondrial [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LIR4|ILVD_ARATH0Dihydroxy-acid dehydratase, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00012} (Precursor)
trEMBLtr|C0P869|C0P869_MAIZE0Uncharacterized protein {ECO:0000313|EMBL:ACN29185.1, ECO:0000313|EnsemblPlants:GRMZM2G014069_P01}
TAIRAT3G239400dehydratase family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001126858062706518+
Transcript Sequence

Network for GWHGAAEX011816

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00920.20ILVD_EDD1436629.50E-212
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01687ilvD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Cysteine and methionine metabolismmap00270
Pantothenate and CoA biosynthesismap00770

Gene Ontology

GO term OntologyName
GO:0009082Biological Processbranched-chain amino acid biosynthetic process
GO:0003824Molecular Functioncatalytic activity
GO:0004160Molecular Functiondihydroxy-acid dehydratase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.410
SRR2545915Juvenile tuber15.850
SRP108465SRR5643513five period of Gastrodia elata24.220
SRR5643514five period of Gastrodia elata32.690
SRR5643515five period of Gastrodia elata24.010
SRR5643524five period of Gastrodia elata34.110
SRR5643525five period of Gastrodia elata7.100
SRR5643528five period of Gastrodia elata5.340
SRR5643658five period of Gastrodia elata5.550
SRR5643659five period of Gastrodia elata24.090
SRR5643660five period of Gastrodia elata26.310
SRR5643661five period of Gastrodia elata27.430
SRR5643662five period of Gastrodia elata19.590
SRR5643663five period of Gastrodia elata18.940
SRR5643664five period of Gastrodia elata18.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.410
SRR6049655Rhizomagastrodiae_C368-T10_good_115.860
SRR6049656Rhizomagastrodiae_C368-T07_good_124.680
SRR6049657Rhizomagastrodiae_C368-T07_good_120.140
SRR6049658Rhizomagastrodiae_C368-T04_good_115.220
SRR6049659Rhizomagastrodiae_C368-T04_good_113.240
SRR6049660Rhizomagastrodiae_C368-T01_good_119.270
SRR6049661Rhizomagastrodiae_C368-T04_good_119.780
SRR6049662Rhizomagastrodiae_C368-T01_good_129.110
SRR6049663Rhizomagastrodiae_C368-T01_good_125.470
SRR6049664Rhizomagastrodiae_C368-T10_good_129.760
SRR6049665Rhizomagastrodiae_C368-T10_good_129.760
SRP279888GastroGastrodia elata tuber 25.55
JuvenJuvenile tuber35.23
Mother_GastroMother tuber of Gastrodia elata 15.56
Mother_JuvenMother tuber of Juvenile 26.68