Gene detail

Detail information of GWHGAAEX011822/evm.TU.scaffold_4.138

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|16124653\|ref\|NP_419217.1\|	1.00E-68	oxidoreductase [Caulobacter crescentus CB15]
KOG	KOG1208	4.00E-156	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
nr	gi\|743835556\|ref\|XP_010935851.1\|	0	PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q6RVV4\|TIC32_PEA	2.00E-155	Short-chain dehydrogenase TIC 32, chloroplastic
trEMBL	tr\|B3TM13\|B3TM13_ELAGV	0	Short-chain dehydrogenase Tic32 {ECO:0000313\|EMBL:ACF06594.1}
TAIR	AT4G11410	4.00E-156	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	2796037	2840816	+

Transcript Sequence
>GWHTAAEX011822 AGGTGACTACAACGAATGCAATCTGGAGACGCAGTATAAAACTGCATCGTTCTGCTCACATCAACAGCTCCGTTTAAAATCTCAAATTCATGAGAGTGGGAAGAATTTGGAGACGCGAGTAAAGATGTGGCCGTTTAGCAGCAAGGGTCCCTCTGGATTCTCTTGGTATTCCACCGCTGAGGAAGTCACCCGAGGATTAGACGGATCTGGTCTCACCGCCATCGTAACAGGGGCTTCAAGTGGAATCGGAGCGGAAACAGCTCGTGTTCTAGCTTTGCATGGTGTTCATGTTGTCATGGCAGTTAGAAGCTTGACTTTGGGCAATAATGTCAAAGAAGCAATTTTAAAAGAGATACCTTCTGCCAAAGTTGATGTCATGGAGTTGGATCTGACTTCTATAGAGTCTGTTCGAAAGTTTGCTTCTGAATACAATTCTAGTGGACTAGCACTAAACTTGCTTATTAATAATGCTGGAGTTATGGCTACCCCTTTTATGCTGTCACAAGATGGTATTGAGCTGCAATTTGCAACCAATCATGTCGGACATTTTCTGTTGACACATCTTCTATTGGAGAATATGAAGAATACAGCTCGTGACAGTAAAATAGAAGGAAGGATTGTCAATGTTTCCTCAGAAGGGCATAAATTTGCTTTTAGAGGAATTCACTTTGACAAGATGAATGAAAAATCAGGATACAACAGCCTTGAAGCATATGGTCAGTCAAAACTGGCCAACATTCTGCATGCAAACGAACTTTCAAGGAGATTAAAGGAAGATGGAGTGGACATTACTGCAAATTCTCTTCATCCAGGATCAATTATTACAAACCTTTTGCGCTACCATAGTTTCATTGATTTGCTTGCTCGTGCTTTTGGGAGACTGGTTCTGAAAAATACTCAACAGGGAGCAGCAACAACATGCTATGTAGCACTGCATCCTGATGTTAAGGGAGTGAGTGGAATATACTTCAATAATTGTAATGCAAGTGATCCAAGCTCCAAAGCTAAGGATGCAGAGTTAGCCAAGAAATTGTGGGATTTTAGCATGGGATTTATCTGATTAAGATTGTTTATCGATTTAATGAAGGTATATTCTTTTGTACTAGAAGTTTTCAAAATAATCTCTCAGTCATTTCGGTTTGATCAATTTATACTTTCGACAATTCAATGTATTCATTTTAGTCCCAAAGTATGTAATCCTTCCAATTTAGTCCCCAACTTGTTTATGTTAAGCTTAAACAGTTCCATTCAATGTATATCTAGTGATTAAATATTGGAAGGATTGGGTAAAGTGAGATTGAGCTGACTAATCTTAAAAGTGTAGGGACTAATTTGAGAAGTATATATTTCTTAAACTTTGTTGCTTCTTATTTGCACATAAGCTTTGTAGTTTTTCAATGCTGATTCTAAGTTGTGCTTTGGCTGTTCAAAGAATAGTAATTGTTGAAATTGTCGAAAGCATAGATTGTTGAAATCATTGGCTTGAGTAAAATATGTGGCTTGTTGGCTAAAACTGGACGTTGATGCTAAGATTTATATCAAATGTTATGAGATGAATTGTTATTTGAAATTTGTGAGGTGTTAAAAGTGAAATATTGTTAACATATGGCATATTCTTATTTCGCTAATGCGATGCTTGTTATCATCAAAAGCATTTCGAAGGCTAACTATGGCTATGTATATCCTTAGATTTTGGATGGTAACTAATTTGGTTAACATATCAATGCGATTCTTTGCATAAAAATTTTATTTAATATGAAAT

Network for GWHGAAEX011822

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.24	adh_short	31	237	7.70E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.530
SRP064423	SRR2545915	Juvenile tuber	12.800
SRP108465	SRR5643513	five period of Gastrodia elata	24.290
	SRR5643514	five period of Gastrodia elata	22.510
	SRR5643515	five period of Gastrodia elata	20.350
	SRR5643524	five period of Gastrodia elata	25.440
	SRR5643525	five period of Gastrodia elata	27.700
	SRR5643528	five period of Gastrodia elata	36.700
	SRR5643658	five period of Gastrodia elata	36.160
	SRR5643659	five period of Gastrodia elata	20.550
	SRR5643660	five period of Gastrodia elata	21.790
	SRR5643661	five period of Gastrodia elata	17.490
	SRR5643662	five period of Gastrodia elata	17.270
	SRR5643663	five period of Gastrodia elata	19.320
	SRR5643664	five period of Gastrodia elata	13.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.670
SRP279888	Gastro	Gastrodia elata tuber	17.38
	Juven	Juvenile tuber	22.73
	Mother_Gastro	Mother tuber of Gastrodia elata	32.19
	Mother_Juven	Mother tuber of Juvenile	27.70