Gene detail

Detail information of GWHGAAEX011823/evm.TU.scaffold_4.139

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743835533\|ref\|XP_010935844.1\|	0	PREDICTED: zinc finger CCCH domain-containing protein 13-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q7XI08\|XB34_ORYSJ	5.00E-09	Probable E3 ubiquitin-protein ligase XBOS34
trEMBL	tr\|M5X5Y5\|M5X5Y5_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ21462.1}
TAIR	AT5G04460	0	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	2843814	2866644	+

Transcript Sequence
>GWHTAAEX011823 GCGGCGTTCCACCGAATTTTCAAACATCGTTCGGCATACAAAATTCGGCTTGAAATTATCAATTATTATTATTATTTTAGGAAGAAATAAAAAAAAATTTTTTTTGACAATTATTCCTCACCATCCGCAGCTCTTCGGTCCTCCTGCATTCCTCTCTCCTTCCTGCATCCCCACGCTTCGGATCGGCCTCGCGTCTTATCTTTTCGCTTTCCGCCATACAAAACAAAAAGAGGCGCGCCAAATCCGAGGAAAGTGAAGTGACCGTCGTTCTTCCTTTTTTACAATTTTGTTAGATCTCTGCTCTCCGTCGCGCAATCGCCGGCCGTCGGCAAGCGAGAAATCTCAGGTCATGTAGGTTTCAGACCCGCCGGCTTGCATGCCGTGTTAGGGTTTTCCAAAATCGTGCCGATCCTGCATAGAAACGCGGGAAAATAATGCCCGATTTCAGGTACAAGCGAGAGGGAGCCGACTTCGATTTCGTCGTCCGCGGTAGCCTCGATGGATGCGTAAGCAGCTGCAGTTCAACTCGAGGCGGCGCAGATGTGGAAGATGACGATTTAACCGAAGATGATGCCCCTGACTTGGTGGCTCGCCGTCGCCGGCGTTCTGCCCTAGAAGACGATGACATCGCCGAGTCTTCCGCAGCAGCTCGACGGCACTCCAGGATCCTGAGCAGCTGGGTTGCGCGCCACGCCGAGGAGATGATCACAAATATCGAGCGCCGAAATCGCGAGTCCGAGCTTATGGCCCTTGCCGGATTACACACTGTTTCTACGTTGGATTCCTCTTTTCTCAGGGAGTCGCGGCGTTCTCCGTCGTCGGTGGAGCGGCCCGTTGCTGCTAGGTCTTCTACAATCCTGCAGATGTGGCGGGAGCTGGAGGACATGTCCGGCGCAAGGGAGAGGAGGAGCAGTGCAACCGGAGACAGGATTAGGCCGGAGGGACGAACAGCTACTGAGAGCCATAGTAACAATTACAGCCAATGGAACCGAGAACCACTGGCGCAAAGTAACGTAGAGGTAACGATTGATGATGATGTTGATAGAAGCTCTAGTAGAGAGCAATCGCCGGATCTTGGAGATGGTGAGAGGGAGAGAGTGAGGCAGATTGTTCGGGGATGGATGGCTGAGGAAAGGATGAGGGAATCGTCAGCTTCAGATCTATCATTAAGGAATGAGAGTCCCAGGTCGGAATGGCTAGGCGAGAATGAAAGAGAAAGAGTGAGGTTAGTGAGGGAGTGGGTCCACATGGCAAGCCAACAAAGAGATGCTCGGGCCAGTAGGAGAGAGGAACCTGATCCAAACCAGACTCGAAATAGTTCCGCCATAGGTCATCATGATGGTCAAGCGGAGCATGTGAGGAGGCCCTCACCAAGGATACGGGGAAGACAGGCTCGTCTTGATCTAATCATGAGAATGGCGAGGGAGAGGCAGCGGGAGCTTCAAGGATTATCTGAGGCAAGAGCTGTTTCAGGTTTTGCTCACCGCGGTAGGATTCAGTCATTACTCAGAGGAAGATTCTTAAGAAATAGAAGCACTGTTGCTGAGGATGGGAGGACAATCTCTATTGCAGCAAGGGAGTTGGGTCAGATAAGACAGGTGCAACCAGTCTCTGGCTTAAGGGATGGATTTCACTCTAGGGCTCAAAGCAGTGAGGGTGGTCTCCGAACTGGCCAAGCTAGCAATTTTTCTGGTTCTAATGCTAGTGATTCCAGAACTGAAGAATTGCATACAACCAATACTGTCGAACTGCCAACTTTCAACCATAATCAATCTGAATCTAGTACCGAGAACGTTGAAACTGAAACAACAGATACAATTCAATTGGAAAGTAATAGACCTCTTGAGGACATGGAGTGGCAAGAATCTGCTAACCAATCTGAAATTTGGCCTGAAAGTGCTTTAGAACACGGAAGAAGGGAATGGCAGCAACCTACTGAAGGTGGTTTGGGCGAATGGCATGATGAGGCTGAAGAAGGATCTGAGAGTCGTTGGCCTGAAAATACTGACCAAGACTGGTTTCACAGAACAACTGAAGGTGGCATGGATCATCATCTCCCAGAATCAGATGATTGGCATGATAATGATTCACAAGTGACTGTGGAGAATTGGCTTGATGAACCTTCTCCTCCCCCAAGAAATCAGTTTGATATTCCCATTAGCAGGGTTAATAGATTTGCTCAGTCTGATGATGAAAATGTTTACAGTATGGAACTTAGGGAACTCTTAAGCAGGAGAAGTGTTTCAAATCTTCTTCATAGTGGATTTCGGGAGAGTTTGGACCGGCTGATAAGGTCATATGTCCAACGACAAGGTCGTGCTCCGCTTGACTGGGATCTTCCGCGAGCCTCACCAACTCCTGCTTCCACCGAGGAGGAGTTGGACCAACAGAGAGAAGAACTAGACCAGCATAGAAATGACTCTATTGTTGATCGAGAGGATAATACTGTTAGGCCTCCAGTTCTCATGCCGCCTCCTGTACCACCAAGACCGCCACTCTGGCATTCTGTACTGCACCATAACGGCTGGAATAGACGGAGCATGCATCGTACTGAGATTGAGTGGGATGCTGTTAATGATTTGAGAGCTGAATTGGTTAGACTTCAGCAAGGGATGAGTAATATGCAGCGAATGCTGGAGGCATGCATGGATATGCAGTTAGAGCTACAACGCTCGGTCAGGCAGGAAGTTTCTGCAGCTTTAAATCGATCCCCTGGGGGAGAAGGTTTGTGCGAAGAGTGGTTAACCGATGGATCCAAGTGGACTCATGTGAAGAATGGAACATGCTGCATTTGCTGTGATTCCCCTATTGACTCTCTTTTGTACAGATGCGGGCACATGTGCACCTGTTCCAAGTGCGCCAACGAGCTGGTCCGAAATGGTGGGAAGTGCCCTCTTTGCCGCGCTCCCATCGTCGAAGTCATTCGAGCTTATTCCATATTGTAAGATACAAACAGACCCAAAAAAAAAAGATCATTATTCTTAAAGAGGAAAAGAAAGAAAAATAAAAGAGGTTAATTTGTTTTCTTGGGGGGAGGTGCTAACATATTTTGTCTGCAACCTCTTTTATCTTTTTTTGTTCTTCTAATTCTCCTCTCATCCATTTTATCTTGAAAATGCCACCATGAGAAATATATATTTATATGTATGTATGTATAGATATTGCATTTTGTTCATCTGACTGACCTTACAGAAGAGGGGAAATAATGGAAATAAATAAGTTCTTGTCAGTTTGAGTAATATGGCATATGGGATTTGAATTATGAATCAAAGAGCTTTAATCAATAGGTAACAAAAATAGGTGTTATTGGGGAGAGGGACATTATAATATTAGCGAAACTAGAGCTATAGAATATATTATATATGTAATGCAAGCTTTTTATACTAAAACTTGTAATATTTGTTGGGTGATGAAAAGAGCAAGTCTAAGCAAAATATGACTCCAAATGTCGAATTCGCTACAACTTCGAGTCATGCTCAAAATTTTTGAGTTCCCGATCTCGTGTTCCGACCTCGTGTTCTGTTCTCTCTTGAGCTATAGAA

Network for GWHGAAEX011823

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.5	zf-C3HC4_3	781	828	3.30E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.150
SRP064423	SRR2545915	Juvenile tuber	32.810
SRP108465	SRR5643513	five period of Gastrodia elata	30.390
	SRR5643514	five period of Gastrodia elata	30.210
	SRR5643515	five period of Gastrodia elata	32.740
	SRR5643524	five period of Gastrodia elata	30.250
	SRR5643525	five period of Gastrodia elata	50.260
	SRR5643528	five period of Gastrodia elata	48.190
	SRR5643658	five period of Gastrodia elata	59.040
	SRR5643659	five period of Gastrodia elata	30.890
	SRR5643660	five period of Gastrodia elata	32.080
	SRR5643661	five period of Gastrodia elata	29.680
	SRR5643662	five period of Gastrodia elata	28.440
	SRR5643663	five period of Gastrodia elata	30.500
	SRR5643664	five period of Gastrodia elata	31.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.240
SRP279888	Gastro	Gastrodia elata tuber	33.03
	Juven	Juvenile tuber	48.55
	Mother_Gastro	Mother tuber of Gastrodia elata	49.16
	Mother_Juven	Mother tuber of Juvenile	66.80