Detail information of GWHGAAEX011828/evm.TU.scaffold_4.144
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302670881|ref|YP_003830841.1| | 1.00E-09 | endo-1,3(4)-beta-glucanase [Butyrivibrio proteoclasticus B316] |
| nr | gi|694996563|ref|XP_009394629.1| | 7.68E-161 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SJL9|XTH32_ARATH | 3.00E-142 | Probable xyloglucan endotransglucosylase/hydrolase protein 32 (Precursor) |
| trEMBL | tr|M0RXN4|M0RXN4_MUSAM | 3.00E-161 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
| TAIR | AT2G36870 | 9.00E-142 | xyloglucan endotransglucosylase/hydrolase 32 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 2955951 | 2961510 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011828
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00722.20 | Glyco_hydro_16 | 43 | 224 | 1.80E-51 |
| PF06955.11 | XET_C | 260 | 295 | 2.30E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042546 | Biological Process | cell wall biogenesis |
| GO:0006073 | Biological Process | cellular glucan metabolic process |
| GO:0010411 | Biological Process | xyloglucan metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity |
| GO:0048046 | Cellular Component | apoplast |
| GO:0005618 | Cellular Component | cell wall |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.640 |
| SRR2545915 | Juvenile tuber | 1.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.810 |
| SRR5643514 | five period of Gastrodia elata | 14.590 | |
| SRR5643515 | five period of Gastrodia elata | 7.230 | |
| SRR5643524 | five period of Gastrodia elata | 8.730 | |
| SRR5643525 | five period of Gastrodia elata | 3.850 | |
| SRR5643528 | five period of Gastrodia elata | 3.130 | |
| SRR5643658 | five period of Gastrodia elata | 4.350 | |
| SRR5643659 | five period of Gastrodia elata | 10.570 | |
| SRR5643660 | five period of Gastrodia elata | 11.170 | |
| SRR5643661 | five period of Gastrodia elata | 9.630 | |
| SRR5643662 | five period of Gastrodia elata | 7.140 | |
| SRR5643663 | five period of Gastrodia elata | 8.330 | |
| SRR5643664 | five period of Gastrodia elata | 8.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.170 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.19 |
| Juven | Juvenile tuber | 14.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.67 | |
| Mother_Juven | Mother tuber of Juvenile | 6.10 |