Detail information of GWHGAAEX011833/evm.TU.scaffold_4.149


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|268317165|ref|YP_003290884.1|5.00E-35Superoxide dismutase [Rhodothermus marinus DSM 4252]
KOGKOG04413.00E-92Cu2+/Zn2+ superoxide dismutase SOD1
nrgi|743852970|ref|XP_010940533.1|4.89E-101PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic [Elaeis guineensis]
Swissprottr|O78310|SODC2_ARATH1.00E-96Superoxide dismutase [Cu-Zn] 2, chloroplastic (Precursor)
trEMBLtr|W1NYZ2|W1NYZ2_AMBTC1.00E-99Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}
TAIRAT2G281903.00E-92copper/zinc superoxide dismutase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001129999003020849+
Transcript Sequence

Network for GWHGAAEX011833

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00080.19Sod_Cu782154.40E-46
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04565SOD1 Peroxisome map04146
Longevity regulating pathway - multiple speciesmap04213

Gene Ontology

GO term OntologyName
GO:0006801Biological Processsuperoxide metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0046872Molecular Functionmetal ion binding
GO:0004784Molecular Functionsuperoxide dismutase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.690
SRR2545915Juvenile tuber24.780
SRP108465SRR5643513five period of Gastrodia elata55.750
SRR5643514five period of Gastrodia elata53.570
SRR5643515five period of Gastrodia elata59.960
SRR5643524five period of Gastrodia elata56.150
SRR5643525five period of Gastrodia elata8.960
SRR5643528five period of Gastrodia elata7.160
SRR5643658five period of Gastrodia elata5.790
SRR5643659five period of Gastrodia elata54.170
SRR5643660five period of Gastrodia elata47.520
SRR5643661five period of Gastrodia elata51.710
SRR5643662five period of Gastrodia elata54.260
SRR5643663five period of Gastrodia elata48.110
SRR5643664five period of Gastrodia elata41.290
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_136.410
SRR6049655Rhizomagastrodiae_C368-T10_good_127.970
SRR6049656Rhizomagastrodiae_C368-T07_good_139.330
SRR6049657Rhizomagastrodiae_C368-T07_good_132.000
SRR6049658Rhizomagastrodiae_C368-T04_good_120.900
SRR6049659Rhizomagastrodiae_C368-T04_good_114.470
SRR6049660Rhizomagastrodiae_C368-T01_good_121.410
SRR6049661Rhizomagastrodiae_C368-T04_good_130.280
SRR6049662Rhizomagastrodiae_C368-T01_good_137.080
SRR6049663Rhizomagastrodiae_C368-T01_good_121.580
SRR6049664Rhizomagastrodiae_C368-T10_good_141.500
SRR6049665Rhizomagastrodiae_C368-T10_good_141.500
SRP279888GastroGastrodia elata tuber 47.11
JuvenJuvenile tuber37.72
Mother_GastroMother tuber of Gastrodia elata 12.03
Mother_JuvenMother tuber of Juvenile 18.00