Detail information of GWHGAAEX011837/evm.TU.scaffold_4.153


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG27781.00E-158Ubiquitin C-terminal hydrolase
nrgi|743875919|ref|XP_010907454.1|0PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like isoform X1 [Elaeis guineensis]
trEMBLtr|A0A061EWP2|A0A061EWP2_THECC9.00E-176Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU361215}
TAIRAT1G656501.00E-158Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001130339423062868-
Transcript Sequence

Network for GWHGAAEX011837

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01088.20Peptidase_C1232385.70E-62
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUCH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016579Biological Processprotein deubiquitination
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0004843Molecular Functionthiol-dependent ubiquitin-specific protease activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.340
SRR2545915Juvenile tuber29.880
SRP108465SRR5643513five period of Gastrodia elata21.100
SRR5643514five period of Gastrodia elata24.290
SRR5643515five period of Gastrodia elata19.540
SRR5643524five period of Gastrodia elata20.030
SRR5643525five period of Gastrodia elata13.460
SRR5643528five period of Gastrodia elata8.890
SRR5643658five period of Gastrodia elata13.640
SRR5643659five period of Gastrodia elata27.740
SRR5643660five period of Gastrodia elata24.250
SRR5643661five period of Gastrodia elata29.090
SRR5643662five period of Gastrodia elata29.520
SRR5643663five period of Gastrodia elata34.840
SRR5643664five period of Gastrodia elata26.390
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.620
SRR6049655Rhizomagastrodiae_C368-T10_good_115.690
SRR6049656Rhizomagastrodiae_C368-T07_good_122.940
SRR6049657Rhizomagastrodiae_C368-T07_good_123.290
SRR6049658Rhizomagastrodiae_C368-T04_good_128.940
SRR6049659Rhizomagastrodiae_C368-T04_good_127.630
SRR6049660Rhizomagastrodiae_C368-T01_good_126.240
SRR6049661Rhizomagastrodiae_C368-T04_good_127.050
SRR6049662Rhizomagastrodiae_C368-T01_good_125.310
SRR6049663Rhizomagastrodiae_C368-T01_good_130.400
SRR6049664Rhizomagastrodiae_C368-T10_good_126.660
SRR6049665Rhizomagastrodiae_C368-T10_good_126.660
SRP279888GastroGastrodia elata tuber 37.62
JuvenJuvenile tuber25.17
Mother_GastroMother tuber of Gastrodia elata 18.34
Mother_JuvenMother tuber of Juvenile 14.88