Gene detail

Detail information of GWHGAAEX011840/evm.TU.scaffold_4.156

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|343082742\|ref\|YP_004772037.1\|	2.00E-15	MATE efflux family protein [Cyclobacterium marinum DSM 745]
KOG	KOG1347	0	Uncharacterized membrane protein, predicted efflux pump
nr	gi\|672127884\|ref\|XP_008787420.1\|	0	PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	3.00E-108	Protein TRANSPARENT TESTA 12
trEMBL	tr\|O23067\|O23067_ARATH	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}
TAIR	AT4G00350	0	MATE efflux family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	3100871	3111716	-

Transcript Sequence
>GWHTAAEX011840 ATGGCGCACATTCAGGCTTTGGAAAAGGGATCGGAAGCGGATGCGGGAGGGGTGGAAGAAGATGAGCCTGAGGTGGGCTCCCTGGGCGCCGCGTGGCACGCCTTTCTCGTAGAATCGAGGAAGCTGTGGGTGATCGCGGCGCCCATCGCATTCAGCATCATCTGCCTCTACGGGATTAATTCCACCACGCAGATCTTCGCCGGCCATCTCGGAAATCTCCAGCTTTCGGCCGTCGCTGTTGGCCTCTCCGTCATTTCCAATTTCTCCTTTGGCTTCCTTCTGGGGATGGGGAGCGCGCTGGAGACTCTATGCGGGCAAGCGTACGGCGCAGGGCAGGTAGAGAAGCTGGGGATCTACATGCAGCGGTCGTGGATCATCCTGACGGCATCGGCGGTGGCGATGTGCCCTCTCTACCTCTTTGCGGCTCCGGCGCTGAAGCTGATAGGGCAGGACCCGGAGATCGCGGACGCCGCCGGTAGGTTCACCGTGGGCATCATCCCGCAGATCTTCGCGCTGGCGATCAACTTCCCGGCACAGAAATTCCTGCAGGCCCAGAGCAAGGTGTGGGCGCTGGCGGGGATCGGATTCGGGGGGCTGGTGGGACACGTGGGGCTGCTGTGCCTGTTCGTGCGATGGATGGAGTGGGGCGTCATGGGGGCGGCGGCCGCGTATGACGTGTCGCAATGGGGCGTAGCGGCCGCGCAGGTGGGCTACGTAGTGTGGCGCTGTGGGGACGCGTGGGGGGAGGGGCTATCCAGGGAGGCCTTCAAGGACATCTGGCCCTTCCTTAGACTCTCCCTCGCCTCCGCCGTCATGCTCTGCCTGGAGATCTGGTATATGATGGTCCTCGTCGTCCTCACCGGTTATCTTCACGACGCACAGATCGCCGTCGCCTCCGTCTCCATCTGCATGAACATCAACGGATGGGAAGCAATGGTGTTCATTGGCATCAACGCAGCCATAAGCGTTCGGGTCTCGAATGAGTTGGGGTCAGGGCGGCCTCGAGCCACCAAACACGCGGTCATCGTGGTGGTTGCCACGTCATTCGTCATCGGCCTCCTCTTCATGATCCTCATACTCTCCGCCCGCAACCAATTTCCGGCTATCTTTACGAGAGACAAGCAGCTGCAGCGCGCCGTTTCCGAGATTGCGCATCTCCTCGGCATAACCATGGTGCTCAACAGCATCCAACCTGTCATTTCAGGTGTGGCAGTAGGTGGGGGGTGGCAAGCTCTTGTGGCTTACATTAACTTGTTTTGCTATTATGTTTTTGGCCTTCCTTTGGGATTCCTGTTCGGCTATGGAATGCATTGGGGAGTTCAGGGTATATGGATGGGTATGCTGTTAGGAACTGCATTGCAGACTGCAATTCTTTGCTATGTGCTTTGGAAAACCAATTGGAATGAAGAGACTTGGTATATGGCTGATGATGAGAAAATGGATGGTAATTCTTCTCAAGGAGCTGACTGGGAGGTTGTTGCTTTAACTGCCTCTACTTATGCTGTTGCCGCTGAAGCAAATGCTGTTTCATTGCATGATTCTAGGGACAATGAGTTCCAACGAGAACACGAGTCATCAAATGCAATGTTCATGTATGAGCATTTTGTTTTCCCACCTCATGAGCATGAAAATCTTCCGGTAGAAGAGGTCCGTGGTGAAATTCATGATCAAATTGAGGGTCATGATATGTTACTTATGGAGAAAGAAGTTAATCGCTTTGATGAGTTTAATAAAGATGTTTCAGACACTGAGCTGTCTATTCTCAACATAGAGTCCCAAGAAGGCCAAACACACTATCTTTCCCATACTGAAACTGTTAGCGATGTCAAGAATGATATTGCAGAGAACTATGATTCTTCTAATGAGCACTTTGGCATCCCTTCAGATTTTGTCAATCTCGCTCATGCAAGTGATGGAAGAAATGCTGAATCCGACCATCCTAGTGAAACATGGTGGAAAAGGCATGCTATCTCTTTGTACAATCATGCAAAAGAAACCAACACATTTTGGTCAATTATCATGGCTGCTGCCTTAATGGGTCTTGTAGTTTTGGGACAACAATGGCAAAGGGAGAAATTGCAGCTTCAGCAACTCAAATGGCAGTTTAGCTTCACAAATGAGAGAATGAGCCGTATATTTGGGTCCGTAAACCGGTTTAAATATGCACTCGTCGGCAGCCATCAACACAGTTCTTTGGTGCATGGTGGCGCTGCTGCTGCTGCCAATCTATGA

Network for GWHGAAEX011840

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01554.17	MatE	48	201	3.40E-29
PF01554.17	MatE	269	431	4.40E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0015297	Molecular Function	antiporter activity
GO:0042910	Molecular Function	xenobiotic transporter activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.600
SRP064423	SRR2545915	Juvenile tuber	9.020
SRP108465	SRR5643513	five period of Gastrodia elata	6.200
	SRR5643514	five period of Gastrodia elata	6.290
	SRR5643515	five period of Gastrodia elata	6.340
	SRR5643524	five period of Gastrodia elata	7.820
	SRR5643525	five period of Gastrodia elata	13.330
	SRR5643528	five period of Gastrodia elata	12.010
	SRR5643658	five period of Gastrodia elata	11.400
	SRR5643659	five period of Gastrodia elata	7.710
	SRR5643660	five period of Gastrodia elata	7.070
	SRR5643661	five period of Gastrodia elata	8.290
	SRR5643662	five period of Gastrodia elata	8.020
	SRR5643663	five period of Gastrodia elata	6.510
	SRR5643664	five period of Gastrodia elata	6.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.230
SRP279888	Gastro	Gastrodia elata tuber	8.98
	Juven	Juvenile tuber	6.76
	Mother_Gastro	Mother tuber of Gastrodia elata	10.47
	Mother_Juven	Mother tuber of Juvenile	8.63