Detail information of GWHGAAEX011841/evm.TU.scaffold_4.157


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08002.00E-26FOG: Predicted E3 ubiquitin ligase
nrgi|672127882|ref|XP_008787419.1|2.10E-34PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Phoenix dactylifera]
Swissprottr|Q8LE94|RING3_ARATH8.00E-24E3 ubiquitin-protein ligase At3g02290
trEMBLtr|V4TM86|V4TM86_9ROSI5.00E-30Uncharacterized protein {ECO:0000313|EMBL:ESR52755.1}
TAIRAT5G413502.00E-26RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001131124743129684+
Transcript Sequence

Network for GWHGAAEX011841

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21281709.70E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.820
SRR2545915Juvenile tuber20.370
SRP108465SRR5643513five period of Gastrodia elata20.360
SRR5643514five period of Gastrodia elata18.030
SRR5643515five period of Gastrodia elata21.080
SRR5643524five period of Gastrodia elata17.780
SRR5643525five period of Gastrodia elata33.920
SRR5643528five period of Gastrodia elata22.130
SRR5643658five period of Gastrodia elata26.460
SRR5643659five period of Gastrodia elata23.380
SRR5643660five period of Gastrodia elata22.720
SRR5643661five period of Gastrodia elata22.480
SRR5643662five period of Gastrodia elata22.240
SRR5643663five period of Gastrodia elata17.290
SRR5643664five period of Gastrodia elata27.290
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.440
SRR6049655Rhizomagastrodiae_C368-T10_good_116.000
SRR6049656Rhizomagastrodiae_C368-T07_good_116.180
SRR6049657Rhizomagastrodiae_C368-T07_good_120.850
SRR6049658Rhizomagastrodiae_C368-T04_good_120.760
SRR6049659Rhizomagastrodiae_C368-T04_good_122.920
SRR6049660Rhizomagastrodiae_C368-T01_good_117.000
SRR6049661Rhizomagastrodiae_C368-T04_good_116.910
SRR6049662Rhizomagastrodiae_C368-T01_good_112.540
SRR6049663Rhizomagastrodiae_C368-T01_good_113.400
SRR6049664Rhizomagastrodiae_C368-T10_good_115.590
SRR6049665Rhizomagastrodiae_C368-T10_good_115.590
SRP279888GastroGastrodia elata tuber 23.14
JuvenJuvenile tuber15.41
Mother_GastroMother tuber of Gastrodia elata 39.10
Mother_JuvenMother tuber of Juvenile 28.42