Detail information of GWHGAAEX011842/evm.TU.scaffold_4.158
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|283781652|ref|YP_003372407.1| | 3.00E-22 | serine/threonine protein kinase [Pirellula staleyi DSM 6068] |
| nr | gi|672127880|ref|XP_008787418.1| | 0 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Phoenix dactylifera] |
| Swissprot | tr|Q39203|SD22_ARATH | 0 | G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 (Precursor) |
| trEMBL | tr|F6I670|F6I670_VITVI | 0 | Serine/threonine-protein kinase {ECO:0000256|PIRNR:PIRNR000641} |
| TAIR | AT4G00340 | 0 | receptor-like protein kinase 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 3130716 | 3133589 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011842
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01453.23 | B_lectin | 96 | 193 | 2.30E-21 |
| PF00954.19 | S_locus_glycop | 225 | 341 | 2.00E-21 |
| PF00069.24 | Pkinase | 510 | 707 | 2.70E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_SD-2b |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0048544 | Biological Process | recognition of pollen |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004674 | Molecular Function | protein serine/threonine kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.150 |
| SRR2545915 | Juvenile tuber | 4.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.630 |
| SRR5643514 | five period of Gastrodia elata | 8.280 | |
| SRR5643515 | five period of Gastrodia elata | 14.210 | |
| SRR5643524 | five period of Gastrodia elata | 8.650 | |
| SRR5643525 | five period of Gastrodia elata | 2.890 | |
| SRR5643528 | five period of Gastrodia elata | 5.690 | |
| SRR5643658 | five period of Gastrodia elata | 1.500 | |
| SRR5643659 | five period of Gastrodia elata | 11.560 | |
| SRR5643660 | five period of Gastrodia elata | 6.770 | |
| SRR5643661 | five period of Gastrodia elata | 9.710 | |
| SRR5643662 | five period of Gastrodia elata | 15.020 | |
| SRR5643663 | five period of Gastrodia elata | 9.830 | |
| SRR5643664 | five period of Gastrodia elata | 8.160 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.12 |
| Juven | Juvenile tuber | 5.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.58 | |
| Mother_Juven | Mother tuber of Juvenile | 34.03 |