Gene detail

Detail information of GWHGAAEX011844/evm.TU.scaffold_4.160

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|20089086\|ref\|NP_615161.1\|	2.00E-15	hypothetical protein MA0188 [Methanosarcina acetivorans C2A]
KOG	KOG1840	0	Kinesin light chain
nr	gi\|743835213\|ref\|XP_010935749.1\|	0	PREDICTED: nephrocystin-3-like [Elaeis guineensis]
trEMBL	tr\|M0U2W4\|M0U2W4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P23570_001}
TAIR	AT2G31240	0	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	3167469	3182069	+

Transcript Sequence
>GWHTAAEX011844 AAAATTGAAACTGAAGAAATATAAAAGACTCGAAAGACCTCTCTGTAGGGTTTTCCCAGAGCCTCTCTTCTTCTGTAGCCAACATTTCCTCAGCTCCAACGCACTTCACCATGAAACGTGCTTTTTCAGCTTCTCTTCTTCTATCCACTCTTCTTAAATCCATCTCCAGACGTTCGCTCCTTCCAAAATTCTTATCCTCCGATTGTTCTGCACTGAATTTATCGCTCATTTCTCATCCAATTTCTTCTCCAATTCCTAAACCCAGTACCAACCATCCGCAAATGCTGCTGAAATTTCACTGTATCCATTCCATTCCCGACCCTAATCCTCACCTTTCGCCTCGGCAGCGGAGACGCAAGGAGAAGTCTGATTTGGAGGGCTCTTTCGAGTCCGCAACTACTACAGAGGAGATCTTGTCCTCCTTCGAAGCTCTCGAGGCCACGTTGGGCGACAAGGATAAAACACTTGGCCTTGCTTGCTTAAAGGTTGGCCAGCATCTGCATTCCATCGGTTCTGACGATCATGAGAAAATTTTAAGCTTGGGCTTGAGAGCTCTGAAGATCCTCGATGACGGTGGGAACGCATCTGTTTCTGTTGCCATGGCTCTTCATTTGGCGGGTTCCGCCAGTTACGATCTGAAGCGGTTTAATGATAGCTTAGGGTTTGCCAACCGGGCAAATCGAATTCTGGGTGTTTTAGAGAAAGAGAATTCAGAGGGCTATGACGTCCTGCCGGTGATCCATGCTGTCCAGCTGCTTATTGGGAACACGAAAACTGCAATGGGGAGGAGAGAGGAGGCTTTGCTTAATCTAAATAGGTGCCTAGAGATAAAGGAGTCTATTTTTGGGCCTAACAGCAAAGAAACTGGCGTTGCCTACAGGGATTTAGCAGAAGCTTATGCTTCAGTTCTGAACTTCAAAGAAGCATTGCCATTATGCGAGAAAGCGCTAAAGATTCATCTATCTCAGCTTGGGCAGAACTCTGTTGAGGTTGCTTATGATCGGCGGCTTCTTGGAGTGATATTTACTGGTTTAGAGGATCATAAGAAGGCATTGGAGCAGAACCAGCTATCACGGAAGATTTTAAAGAGCTGGGATATGAGTTCTGATTTGATCGTTGCAGAGATTGATGCTGCCAATATACAGATTGCTTTGGGAAAGTATGATGAGGCTATTAACACTCTCAAAGGAGTTTCTGAACAGACAGAAAAGGATAGTGAAGTCCGTGTATTGGTGCTGATCTCAATGGCAAAGGCGCTTTGTAGCCAAAAGAAGTTTGGAGAGGGAAAGAGTTGTTTGGAGATGTCCTATGCTATTCTTGAAATGAAAGAAATTCACTTGCCTTCAAAGGTTGCTGAATCGTATATGGAAATGTCATCTCTCTACGAGACAATGAATGATTTTACAACTGCAATATCGTTGCTGAAGAGGAGCCTTGAAATAATTGAAAGGCTTCCACAGGAGCAACACATGGAAGGGAATCTCTTGGGAAGGATAGGATGGTTATTTCTCTTGACTGGGAAGGTTGAGGAGGGAATTCCATATTTAGAAAATGCAGCCGAAAGGCTGAAGGAAAGCTTTGGCCCCAAATATTTTGCAGTTGGATATGTCTACAACAATTTGGGTGCAGCGTACTTGGAACTGGAAAGGACACAAACAGCTGCGCAGATGTTTGCTGTTGCAAAAGATATAATGGATGTTTCATTGGGACCACATCATGCAGATTCTATAGAGACATGCCAGAGCCTTGCTAATGCCTACAGTGCAATGCAGAGCTACACCCTGGCCTTGGAATTTCAAAAAAAGGTTGTTGATGCATGGGAAAGCCATGGTGCGAGCGCTAGCGAAGAACTGGCAGAGGCAAACCGGGTACTTGAAGACCTAAAGAAGAAGGCTTATGAATGGATACCCGATTTAATGGTAGAACATGCTAAATCATTGTCCGAAAGGAAAGTCTTTGACCCTACAGAGCTTGTGCAGTAATGATTTGAAGGTAATTGTGTACATTTGATATGAAAATATTTTTGATGTTTTATGCCCCTTATTTAGAGCAAAACCGATTTAATGTAAATATAAGATAGATACAAAGGAATTTTTAACCTAAACCTTTCGTAAGGACGTCAAACTGGTTTTCTTGGATGGGTCAGGAAAATGAAAAATAAAATAAGCAGCAAAGGCTCTTTTAGCACAGTTATCAGCCAATGCTTTAGCGAATCTACTAATTTAGGAAAAAAACAACTCCTTAAAATTTTAACAGATAAGCTAACTTTCACTTATCTAATTGTTGGCCAATTGCAACTCTAACTTGGGTCCAATTTATAGTTGGAAGTTTATTGCATCCAAACTGGTCTTTCTACCATGATTTCTTCATAGCATGTCCCTTCATCTATAATAGTATTCAGGATCAATTCCAAAGCGCTCAATTCAGTCCAGTTACTGTTAGTAAATACACTTATTAGCATCCCAGACTGTAAAAACTTCTGCAACATGAGGAGTATAAGACAGGAAGGAGAAATCAAAGTTTATCTTAAACTATAGATGGGGTGGGATTGCCACACTATATTTTGGTTACCAAAGTTACATAACATACCATCCCAGATAACCGCAATTGGATCGAGA

Network for GWHGAAEX011844

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13424.5	TPR_12	213	264	1.70E-07
PF13181.5	TPR_8	415	444	0.031
PF13424.5	TPR_12	468	524	1.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.270
SRP064423	SRR2545915	Juvenile tuber	11.840
SRP108465	SRR5643513	five period of Gastrodia elata	8.330
	SRR5643514	five period of Gastrodia elata	9.590
	SRR5643515	five period of Gastrodia elata	9.270
	SRR5643524	five period of Gastrodia elata	9.820
	SRR5643525	five period of Gastrodia elata	6.100
	SRR5643528	five period of Gastrodia elata	5.920
	SRR5643658	five period of Gastrodia elata	4.860
	SRR5643659	five period of Gastrodia elata	10.760
	SRR5643660	five period of Gastrodia elata	9.420
	SRR5643661	five period of Gastrodia elata	11.520
	SRR5643662	five period of Gastrodia elata	11.830
	SRR5643663	five period of Gastrodia elata	10.090
	SRR5643664	five period of Gastrodia elata	10.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.330
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.770
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.560
SRP279888	Gastro	Gastrodia elata tuber	16.47
	Juven	Juvenile tuber	15.29
	Mother_Gastro	Mother tuber of Gastrodia elata	10.18
	Mother_Juven	Mother tuber of Juvenile	11.47