Gene detail

Detail information of GWHGAAEX011845/evm.TU.scaffold_4.161

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|557694469\|ref\|YP_008797523.1\|	2.00E-40	protein phosphatase [Candidatus Caldiarchaeum subterraneum]
KOG	KOG0374	0	Serine/threonine specific protein phosphatase PP1, catalytic subunit
nr	gi\|743853253\|ref\|XP_010940610.1\|	0	PREDICTED: serine/threonine-protein phosphatase PP1-like [Elaeis guineensis]
Swissprot	tr\|P48489\|PP1_ORYSJ	0	Serine/threonine-protein phosphatase PP1
trEMBL	tr\|A0A072VMY9\|A0A072VMY9_MEDTR	0	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
TAIR	AT2G39840	0	type one serine/threonine protein phosphatase 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	3200489	3220898	+

Transcript Sequence
>GWHTAAEX011845 GTCGGGACGGGGGGCCAAATATTTTTACCGCCTGTTCAACTCGGAAATCGGAACATGTATTGATAGGCATCTCATTCCTCTTCCGGCTCTTCGTTCACCTTGATTCTTCTCGAAGTCAAACGCACGCCTCTCCTTACCAAAGGAGGAGTAGCAGTCGCGCGATTGCATCTTTTTTCGCTCTGAAGCAGGTAAATCCCCTGCTATAGAGGGCGTAGCTGGGGAAGAGAGAAAGAGAGGGATGTTCTATCAAGAGGCCGTAGTATTGTCTAGGGTAAGAAACCGTAGGGGCCGAAAGTTCCATCTTTTTTCTTGCAACCCTTTCCTATCTTCTTGCGGAGGCCTTGGCGCCCGATCGGCTTCTAGCTAAAGCGAAGGTCTTTTTTCGTTTTAGTCTGTTTCGCGTTTCTAGGGTTTAGAGAGGGGAGGGTAGCGATTGATGGATAGTGGTCTTCTGGATGATATCATCCGGCGGCTGCTGGAGGTGAGAAGGAGACCAGGAAAGCAGGTGCAGCTCTCTGAGGCGGAGATTCGTCAGCTCTGCCTTGTGTCACGTGACATCTTTCTGCAGCAGCCCAATCTGCTCGAGCTTGAGGCTCCCATTAAAATTTGTGGCGACATTCATGGGCAATACTCTGATTTGTTAAGGCTCTTTGAATATGGAGGACTTCCTCCAGCAGCTAATTACCTTTTCTTGGGGGATTATGTAGATCGAGGGAAGCAGAGTCTTGAATCAATATGCCTTCTTTTAGCCTACAAAATAAAATACCCTGAAAACTTCTTCCTTTTGAGAGGGAACCATGAGTGTGCTTCAATAAACCGTATTTATGGGTTTTATGATGAATGTAAGCGTAGATTCAATGTCAGAATTTGGAAAGTATTCACCGACTGCTTTAACTGCCTTCCTGTGTCAGCTCTCATCGACGAAAAGATCCTTTGTATGCATGGAGGTCTATCTCCAGATTTGCATAGTTTGGATCAGATAAGAAACCTAGCACGGCCAACTGATGTTCCCGATACTGGTTTACTCTGCGATCTTCTCTGGTCTGATCCGAGTAAAGAAGTTCAAGGTTGGGGAATGAATGATAGAGGAGTTTCCTATACCTTCAGTTCTGACAGGGTGTCTGAGTTCCTTCAAAAGCACGATCTAGATCTTATATGCCGTGCTCACCAGGTTGTTGAAGATGGTTATGAATTTTTTGCGGATAGGCAACTTGTTACAATATTTTCTGCACCAAATTACTGCGGTGAATTTGACAATGCCGGTGCTATGATGAGTGTGGATGACACTCTGATGTGTTCTTTTCAGATATTAAAGCCTGCAGAAAAGAAGAACAGGCTAAACTTTGGAAGTACGACTAGTAAATTGGGGACACCTCAACCCGGGGTAAAGGTATGCACATCACTCAAATTAGTTGCCAAGTGCATTGTTAACTTATAATTGATTGTTGATTAAAGTGCAACCAAAATGTAATAATAAGGTATAGATAATGGTGCATTAATGTCTAAATTTTGAGTTTTCTTTTTGTTTCTATCAATGTTAGTGGATTCAGTTTTTTTAGTATGAACTATGTGAACGGGAGAATATGCTTGATTTCCGATTGAAAAACAATTCTGAGCATACTATGGAATACATAGGAGACTCAGATTTGTGCCACCTTTCTCCAATTAGGTATAGAAATGAAAAATAGACATAATATATATACTATATAATACTTGTTGCTTAAATCCAAGCCTTCTATGGATTACATATTATGCTTAGAATTTTGTGTTTTAGTGTTTGACCATATTTATAGGGGAAGATTGAATTAGAAAGGTATAATCAAGAACAATGAATGTTAATTTACTGTTTTTGAACTTCAAATAGCTAGGCTATTTTATGTATACGATTGAAATCCTGAACTTCATAAATTTCTTTGATCTTTTTCGGACGATGAATTATTAACCTTAATTTGATTTTTAATTCTTTTGTTGCTCGTAAGATTGATAAATAGACTGTAAAACTGTATTTTTTATTGAGATTATTACATGCATTATGCCTAAATTTTCTGCTCTTTTGTATTTAGCACACAAATCTTTATTTTTTATAAAATTAACACTATCACTTCCCATGCATGAAATGTCATCCACTTGTAATGATTTGCAGAGGCTTAGTAATTTTTATTTTGGTATAAAAATTATAATTTTAGACATGTTGAAATAAAAATTCTGGTGTTAGATATATTACTACGAAGGTTTTTGAGTGGTATGCATGAAATTTCCCTTTTCAGGTAAGTAGGAAGTTTATTGAGAACAAGCTTAAAATCAGAATTTGATATATGCGAAAGCTCAGGGGCTGTTTGGCATAAGAAAAATTGAATATAAAGTAATTTGATTACAATATAATTTGATTACAGTATAATGAAATTAATGTTGTTTGGTAATTTTTCAAGAAACTTAGATTCATCTGTTTAGAATAAAGTAATCTGCGAGTATGGTGTTTCGAGTAATATAGGAGGGTAAAATTATTTCTCTTAAATTTTATTTTTATATTTTTCCAATTTTTTTAGGGTTTCTGCTGAAGATGAATTCGATGCCACATTCGAATCGAAATGAAATCGAACGATTTCGAACTATTCACGTTTGAATTGAACGATTTTGTTCAAATAGAGAGGATTCAAACGATTTGTTCGAATTGAACGATTTCTCCGAACGAAAAGAGAGGATGGCCTTTGAGCCGAAAGCTATGCATATCGAAAGATTCCTTTGAACGAACGCATTGCTGGTTTGAATGTCGAAGGCATGGGCGAAGGCGTGGGCGAAGGCGTGGGCGAAGGCGTGGGCGAAGGCATGGGCGAAGGCGTGGGCGAAGTGGCGGCGAACGTTAAAGTCGTGGACTAAGCTCCGCGTAGCACTGCTTTCTTTCTTGTAAAACGCGATATCAGCTGATTTTGCCGAAAAAACTAAATCTACTCCACTAGCTTTTAATAGTTGATTCTAATTTACAATTCCAAAAATAAATAAAGGAGGATGATGAAGCATCAAAGACAATTGATAGAGTTGCTAGTGGGAGATGGTTAATGCGAGTCCTGCTGATAATACATGAATCATATCGAGGCAGCAAACCCAATCACCTTAAATAGAGTGGCTTGTCGACTTGGGGCCGCCAGCAAGCGGCAAGCTTTTCTGTGCTGTTGTGCTAGCATATGGAAGCTTAATGAGGCAGCAATGCCTTGCATCTTTAATTGTCAAGATTAGTGGCTCACCGGTGACAGGTCTTGGTATGGGGCCTCAACTGCATGAGCTGTCTGCTCGACTCGGAGGCTTATTGATGAGGTGACTTCTGGCCATCGGACACAGCTGTGGAACCAGGAGCAGGTTTGAGGTCCTTTCTTGGGGCAAAAGTCTGAGGCCTAAGCACACTTGCAAAACCACACGTTTGGGCGACGCATTAGTTCATCCAATTGGAATTCGGACAGCCGTTTGATAATGTATTGTTATTACTACGACATGTGTTATTATTAGACGACATTGTGAGCATAAATGCCTTGAGAGAAGCAACAGGGGTAAATTACTGCTGGAGATGCTATTCCTCCCAATTTTCACTGTAATAATGATACTGAACAACACTTCTACTTTTAGTTTGGTAGTATTTGGCCAAGTGAAGGGCTGTGTATTGCATCATAATGTTATGCTGTTTTATTTTAACTTGTGCCATGTTTTTATGGGTGTTTGAATTGAAGAATCATCATTTACTTTTGAAAAAAAGTTTTGAGCCCTGATGGAACTAGTCGTCATGGTTGCTGCCTATTCTGGCTAAATGCTTCGTTCTTTCTTAAGTGCATCTGATGATATGCTCTTTATTCTTATTGC

Network for GWHGAAEX011845

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16891.4	STPPase_N	6	52	2.80E-22
PF00149.27	Metallophos	54	245	3.40E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06269	PPP1C	mRNA surveillance pathway	map03015
		Hippo signaling pathway	map04390
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		Focal adhesion	map04510
		Regulation of actin cytoskeleton	map04810
		Platelet activation	map04611
		Insulin signaling pathway	map04910
		Oxytocin signaling pathway	map04921
		Adrenergic signaling in cardiomyocytes	map04261
		Vascular smooth muscle contraction	map04270
		Dopaminergic synapse	map04728
		Long-term potentiation	map04720
		Inflammatory mediator regulation of TRP channels	map04750

Gene Ontology

GO term	Ontology	Name
GO:0016787	Molecular Function	hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	62.190
SRP064423	SRR2545915	Juvenile tuber	44.780
SRP108465	SRR5643513	five period of Gastrodia elata	34.850
	SRR5643514	five period of Gastrodia elata	32.110
	SRR5643515	five period of Gastrodia elata	35.400
	SRR5643524	five period of Gastrodia elata	32.260
	SRR5643525	five period of Gastrodia elata	35.860
	SRR5643528	five period of Gastrodia elata	44.300
	SRR5643658	five period of Gastrodia elata	36.410
	SRR5643659	five period of Gastrodia elata	36.340
	SRR5643660	five period of Gastrodia elata	41.660
	SRR5643661	five period of Gastrodia elata	39.500
	SRR5643662	five period of Gastrodia elata	46.530
	SRR5643663	five period of Gastrodia elata	40.220
	SRR5643664	five period of Gastrodia elata	46.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.720
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.360
SRP279888	Gastro	Gastrodia elata tuber	48.06
	Juven	Juvenile tuber	46.30
	Mother_Gastro	Mother tuber of Gastrodia elata	34.64
	Mother_Juven	Mother tuber of Juvenile	47.93