Detail information of GWHGAAEX011854/evm.TU.scaffold_4.172_evm.TU.scaffold_4.173
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0773 | 2.00E-87 | Transcription factor MEIS1 and related HOX domain proteins |
| nr | gi|672127806|ref|XP_008787379.1| | 1.16E-128 | PREDICTED: BEL1-like homeodomain protein 9 [Phoenix dactylifera] |
| Swissprot | tr|Q9SJJ3|BLH8_ARATH | 6.00E-88 | BEL1-like homeodomain protein 8 |
| trEMBL | tr|A0A067LIF5|A0A067LIF5_JATCU | 8.00E-117 | Uncharacterized protein {ECO:0000313|EMBL:KDP44019.1} |
| TAIR | AT2G27990 | 2.00E-87 | BEL1-like homeodomain 8 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 3345619 | 3351960 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011854
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07526.10 | POX | 140 | 258 | 6.50E-39 |
| PF05920.10 | Homeobox_KN | 315 | 354 | 2.50E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-BELL |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.450 |
| SRR2545915 | Juvenile tuber | 1.690 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.850 |
| SRR5643514 | five period of Gastrodia elata | 2.060 | |
| SRR5643515 | five period of Gastrodia elata | 3.160 | |
| SRR5643524 | five period of Gastrodia elata | 1.980 | |
| SRR5643525 | five period of Gastrodia elata | 3.860 | |
| SRR5643528 | five period of Gastrodia elata | 3.630 | |
| SRR5643658 | five period of Gastrodia elata | 2.450 | |
| SRR5643659 | five period of Gastrodia elata | 4.150 | |
| SRR5643660 | five period of Gastrodia elata | 3.540 | |
| SRR5643661 | five period of Gastrodia elata | 5.360 | |
| SRR5643662 | five period of Gastrodia elata | 3.800 | |
| SRR5643663 | five period of Gastrodia elata | 4.370 | |
| SRR5643664 | five period of Gastrodia elata | 4.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.58 |
| Juven | Juvenile tuber | 1.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.50 | |
| Mother_Juven | Mother tuber of Juvenile | 1.60 |