Detail information of GWHGAAEX011855/evm.TU.scaffold_4.176
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|42522890|ref|NP_968270.1| | 6.00E-86 | glutaminyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100] |
| KOG | KOG1147 | 0 | Glutamyl-tRNA synthetase |
| nr | gi|743855500|ref|XP_010941452.1| | 0 | PREDICTED: glutamate--tRNA ligase, cytoplasmic-like [Elaeis guineensis] |
| Swissprot | tr|P52780|SYQ_LUPLU | 3.00E-68 | Glutamine--tRNA ligase |
| trEMBL | tr|V7BGS0|V7BGS0_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW17057.1} |
| TAIR | AT5G26707 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 3391664 | 3400664 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011855
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00749.20 | tRNA-synt_1c | 216 | 519 | 1.40E-99 |
| PF03950.17 | tRNA-synt_1c_C | 522 | 698 | 3.00E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0043039 | Biological Process | tRNA aminoacylation |
| GO:0006424 | Biological Process | glutamyl-tRNA aminoacylation |
| GO:0006412 | Biological Process | translation |
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004818 | Molecular Function | glutamate-tRNA ligase activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 117.520 |
| SRR2545915 | Juvenile tuber | 87.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 44.700 |
| SRR5643514 | five period of Gastrodia elata | 47.920 | |
| SRR5643515 | five period of Gastrodia elata | 43.290 | |
| SRR5643524 | five period of Gastrodia elata | 46.800 | |
| SRR5643525 | five period of Gastrodia elata | 63.500 | |
| SRR5643528 | five period of Gastrodia elata | 56.360 | |
| SRR5643658 | five period of Gastrodia elata | 60.940 | |
| SRR5643659 | five period of Gastrodia elata | 45.640 | |
| SRR5643660 | five period of Gastrodia elata | 48.750 | |
| SRR5643661 | five period of Gastrodia elata | 47.560 | |
| SRR5643662 | five period of Gastrodia elata | 48.650 | |
| SRR5643663 | five period of Gastrodia elata | 51.130 | |
| SRR5643664 | five period of Gastrodia elata | 53.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 50.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 53.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 49.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 53.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 48.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 51.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 57.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 58.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 58.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 46.87 |
| Juven | Juvenile tuber | 43.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.59 | |
| Mother_Juven | Mother tuber of Juvenile | 59.08 |