Detail information of GWHGAAEX011860/evm.TU.scaffold_4.183
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|333910254|ref|YP_004483987.1| | 0 | ATPase AAA [Methanotorris igneus Kol 5] |
| KOG | KOG0730 | 0 | AAA+-type ATPase |
| nr | gi|743835093|ref|XP_010935717.1| | 0 | PREDICTED: cell division cycle protein 48 homolog [Elaeis guineensis] |
| Swissprot | tr|P54774|CDC48_SOYBN | 0 | Cell division cycle protein 48 homolog |
| trEMBL | tr|M0SYS9|M0SYS9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P15500_001} |
| TAIR | AT5G03340 | 0 | ATPase, AAA-type, CDC48 protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 3488553 | 3493543 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011860
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02359.17 | CDC48_N | 28 | 109 | 1.50E-19 |
| PF02933.16 | CDC48_2 | 130 | 193 | 6.50E-11 |
| PF00004.28 | AAA | 243 | 372 | 3.70E-48 |
| PF00004.28 | AAA | 516 | 649 | 3.90E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13525 | VCP, CDC48 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016787 | Molecular Function | hydrolase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.760 |
| SRR2545915 | Juvenile tuber | 16.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.040 |
| SRR5643514 | five period of Gastrodia elata | 15.650 | |
| SRR5643515 | five period of Gastrodia elata | 15.180 | |
| SRR5643524 | five period of Gastrodia elata | 16.250 | |
| SRR5643525 | five period of Gastrodia elata | 24.120 | |
| SRR5643528 | five period of Gastrodia elata | 27.190 | |
| SRR5643658 | five period of Gastrodia elata | 25.140 | |
| SRR5643659 | five period of Gastrodia elata | 16.670 | |
| SRR5643660 | five period of Gastrodia elata | 17.280 | |
| SRR5643661 | five period of Gastrodia elata | 15.340 | |
| SRR5643662 | five period of Gastrodia elata | 17.860 | |
| SRR5643663 | five period of Gastrodia elata | 15.310 | |
| SRR5643664 | five period of Gastrodia elata | 16.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 24.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.34 |
| Juven | Juvenile tuber | 11.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.46 | |
| Mother_Juven | Mother tuber of Juvenile | 18.90 |