Gene detail

Detail information of GWHGAAEX011861/evm.TU.scaffold_4.184

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	0	FOG: PPR repeat
nr	gi\|672139559\|ref\|XP_008793566.1\|	0	PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Phoenix dactylifera]
Swissprot	tr\|Q9SS97\|PP205_ARATH	0	Putative pentatricopeptide repeat-containing protein At3g01580
trEMBL	tr\|F6HUU4\|F6HUU4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58462.1}
trEMBL	tr\|F6HUU4\|F6HUU4_VITVI	8.00E-94	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58462.1}
trEMBL	tr\|F6HUU4\|F6HUU4_VITVI	9.00E-52	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58462.1}
trEMBL	tr\|F6HUU4\|F6HUU4_VITVI	1.00E-40	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58462.1}
TAIR	AT3G01580	0	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	3497068	3499383	+

Transcript Sequence
>GWHTAAEX011861 AGATCTTGAGAAGTTTAGTACACATGTAGAAGAAGCTGCAACAACAGTGAGACATATCCGCCGTATGTTTGGAATGTCAAAGAGAACAGCAATGGCGTAGACCGTTTTCTCAACATGGAAGCTGATCTCTCAGCTTATAACCATGAGCAAAAGAAGAGAGCTGATCTCTCAGCTGCTGGAAGCCAGCACCGATGCAAAATCCATCTCTCAGATACACTCTCACCTCCTCCGTTGCGGTCTTCTTGCAGCCTCTGAATGCTTTTTTGGCACTCGATTGGTCTCCAAGTATGCCAAGCACTGCTCATCTCCTGCTGCCCGCAGGCTGTTCGACGAAATGCCCCACCCAAACACTAAGCTTTGGAATGCCGTCCTTCGATCTCACTTCCGAGCTCAGCAATGGATTGAGACCCTTCGTCTTTTTCGCCGGATGGCAATCAATCCATCTGACCTTGACGCGTTCACACTGCCTATTGCTCTCAGGTCTTGCGCTGCGCTGGCTGAGCTCCTCCATGGCCGGGCTATCCATGCCGCGTCTGTTAAAAAGGACTTCCATGGTTCCGATGTGTTTGTGGCAGCAGCACTTGTCGAAATGTATGCCAAATGCTGCAAGATGGATAATGCTTGCTCGGTTTTTGAGGGATTCATGCGACCGGATGTTGTGCTTTGGACTTCAATGGTTTCCGGATACCAGCAGAACGGCAACGCCCGGCATGCCGTAGCGTTCTTTTCCAGAATGGTTGTCGAAAGGCATGTCATCCCTGATTCTGTGACTCTAGTGAGCATCGTTTCTGCATTGGGGCAGCTGGGAGATTTTCGTAGAGGAAGGTGTTGCCATGGATTTGTGCTCAGGATGGGCTATTTTCATGATATCTCCCTAATGAACTCAATTTTGAATCTTTATTCGAAGTTAGAAAGAGTTGGAACTGCAAGGAAAGTGTTCGAGAGAATGCCTGAAAAGGATGTGATCAGCTGGAGCTGTATGATATCTTGTTATGCTCGTAACGGGGATCCCAAAGCTGCATTGGAGGTATATAATATGATGGTTGAGAAAGGATTGCAGCCCAGTTATGTCACAGTGGTCAGTGTTCTACAGGCCTGCTCTTTGTCTTGTGATCTTTCAAAGGGGAAAGAGCTTCACGAAGTAGCCATTCAATTGGGCTTTGAATTAGAGGTATCACTTGCCACCTCTCTTATAGATATGTACATGAACTGTTCCTGTTATAAGGAGGCGATCCGTCTGTTCTATCGAATGCCTAAAAGGGATGCTGTCACATGGGCAGCCGCCATTGATGGATGTTCTAAGAATGGATTTGCTGATGAATCGCTTAAACTTTTCAAGGCCATGCTGATTAGCATTGAAGTGTATCCCGATGCTGTCTTGATGGTAAAGGTGCTTGTTGCGTGCTCGCGCATAGGAGTCCTTAGCCAAGCGAGCTGCCTTCATGGATACTTGATTAGATGTGGTTTCAGTGATAATGTTTATGTGGCTTCTGCACTGGTGGACTTGTATTCCAAATGCGGCAGATTAGATGATGCAGTGAGAGTATTTGAAAGCAGATTTGAGAAGGATGTGGTACTCTGGAGCTCAATGATTGCGGGCTATGGCATTAACGGCTGCGGATCCAAGGCCATTGAAGCCTTTGAACATATGGTTGAGTTATCTATCAAGCCTAACAACATTACCTTTGTTTCGGTCTTATCGGCTTGCAGCCATAACGGGATGGTGCAGCAAGGGCGAAGAATATTTGACAATATGGTTCGCGCTTTCGGTGTTGCTCCCAACTCATTGCATTACTGCATTATGGTCGACCTGCTTGCTCGAAACGGTGAATTGCGTGAGGCTTTGAGCCTTGTTGAGAAGATGCCAAAGCCAAAGGAGCCTCATGTTTGGTGTGCATTGCTTTCTGGCTGCAGGTTGCACCAGGATATTGAGATGGGTCAGTTGGTTGCTCAGAGATTGCTTGAGATTGATCCTTCCTATGCTGGATATTATAGCCTACTGGCTAATGTGTATGCAGTAGGTGGTAAATGGAGTGATGCTGAAGTAGTCAAGAGATTGATGAAAGAAAGAGGGATGAGGAAAATGCCAGGTTGTAGTGCTGTTGAAATATGCAATGAGGTTCATATGTATTTAGCTGGCCAGGAGATGTGCCTAGAGACTGAAAATGCTTTTGATTCGTTAAGGGCAATAAAAGTGAAGGGAAGAGAGGAAGATTATGCCTCTACTAATAATCTATTTTCTTCTAATGAGGTATGTTTACTAGAAGCATGTGTATAGGTTTTACTTCTATTTTGGAATATATATATATATATATA

Network for GWHGAAEX011861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	73	96	1.2
PF01535.19	PPR	173	200	0.00031
PF13041.5	PPR_2	272	319	2.70E-11
PF01535.19	PPR	348	373	0.011
PF01535.19	PPR	376	402	0.00032
PF01535.19	PPR	450	470	0.059
PF13041.5	PPR_2	475	523	4.00E-09
PF01535.19	PPR	551	575	0.001
PF01535.19	PPR	617	644	0.4

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.600
SRP064423	SRR2545915	Juvenile tuber	6.060
SRP108465	SRR5643513	five period of Gastrodia elata	5.580
	SRR5643514	five period of Gastrodia elata	6.710
	SRR5643515	five period of Gastrodia elata	5.710
	SRR5643524	five period of Gastrodia elata	4.810
	SRR5643525	five period of Gastrodia elata	1.050
	SRR5643528	five period of Gastrodia elata	0.570
	SRR5643658	five period of Gastrodia elata	0.410
	SRR5643659	five period of Gastrodia elata	8.030
	SRR5643660	five period of Gastrodia elata	8.790
	SRR5643661	five period of Gastrodia elata	10.930
	SRR5643662	five period of Gastrodia elata	8.080
	SRR5643663	five period of Gastrodia elata	7.570
	SRR5643664	five period of Gastrodia elata	8.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.590
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.040
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.040
SRP279888	Gastro	Gastrodia elata tuber	9.38
	Juven	Juvenile tuber	5.30
	Mother_Gastro	Mother tuber of Gastrodia elata	1.06
	Mother_Juven	Mother tuber of Juvenile	1.44