Detail information of GWHGAAEX011865/evm.TU.scaffold_4.189


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34081.00E-25U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing
nrgi|672161475|ref|XP_008800553.1|2.78E-66PREDICTED: zinc finger protein 593 homolog [Phoenix dactylifera]
trEMBLtr|J3MVE3|J3MVE3_ORYBR4.00E-63Uncharacterized protein {ECO:0000313|EnsemblPlants:OB08G30740.1}
TAIRAT2G369301.00E-25zinc finger (C2H2 type) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001136174493631017+
Transcript Sequence

Network for GWHGAAEX011865

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12171.7zf-C2H2_jaz60861.20E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms62.550
SRR2545915Juvenile tuber75.220
SRP108465SRR5643513five period of Gastrodia elata122.400
SRR5643514five period of Gastrodia elata113.520
SRR5643515five period of Gastrodia elata116.480
SRR5643524five period of Gastrodia elata120.030
SRR5643525five period of Gastrodia elata82.250
SRR5643528five period of Gastrodia elata73.440
SRR5643658five period of Gastrodia elata64.800
SRR5643659five period of Gastrodia elata162.570
SRR5643660five period of Gastrodia elata162.830
SRR5643661five period of Gastrodia elata191.280
SRR5643662five period of Gastrodia elata147.000
SRR5643663five period of Gastrodia elata156.700
SRR5643664five period of Gastrodia elata163.670
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1101.430
SRR6049655Rhizomagastrodiae_C368-T10_good_1103.200
SRR6049656Rhizomagastrodiae_C368-T07_good_1125.810
SRR6049657Rhizomagastrodiae_C368-T07_good_196.690
SRR6049658Rhizomagastrodiae_C368-T04_good_1111.010
SRR6049659Rhizomagastrodiae_C368-T04_good_182.550
SRR6049660Rhizomagastrodiae_C368-T01_good_198.240
SRR6049661Rhizomagastrodiae_C368-T04_good_1104.510
SRR6049662Rhizomagastrodiae_C368-T01_good_1131.250
SRR6049663Rhizomagastrodiae_C368-T01_good_1121.890
SRR6049664Rhizomagastrodiae_C368-T10_good_1145.560
SRR6049665Rhizomagastrodiae_C368-T10_good_1145.560
SRP279888GastroGastrodia elata tuber 243.57
JuvenJuvenile tuber156.46
Mother_GastroMother tuber of Gastrodia elata 113.35
Mother_JuvenMother tuber of Juvenile 121.83