Gene detail

Detail information of GWHGAAEX011866/evm.TU.scaffold_4.190

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|389877554\|ref\|YP_006371119.1\|	protein GroL [Tistrella mobilis KA081020-065]
KOG	KOG0356	Mitochondrial chaperonin, Cpn60/Hsp60p
nr	gi\|743826168\|ref\|XP_010933209.1\|	PREDICTED: chaperonin CPN60-2, mitochondrial-like [Elaeis guineensis]
Swissprot	tr\|Q05046\|CH62_CUCMA	Chaperonin CPN60-2, mitochondrial (Precursor)
trEMBL	tr\|A0A059B1M2\|A0A059B1M2_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW60142.1}
TAIR	AT3G23990	heat shock protein 60

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	3637216	3652985	+

Transcript Sequence
>GWHTAAEX011866 TATCGTAATCCGCGGATTACGATATCCGAAACTTCATACCACTGCGGATGTTTCTAGAGACTACTCCCTCTCAAAAACCTCTAAAATCCTTGCATTTCTGTCACTTTATATGCGCTGTCAACTCTTTTTAAAACCCTAAACCCTTCTGTGATCATCCATCAGCCGCCAGTTGGAGTTCGCCCCATTTTCTCTCCTCCCTGCTACCGTCTCAACGAAAATCCAAAGGCTTAGCTTTCGCCATGTATCGCTTTGCCTCCAAACTCGCCTGCAGAATCCGGGTTTCCAACGGCGGTAGCAGCAGCCGACAGATTGGAAGCAGGTTTGCTTGGAGCAGAAATTATGCCGCAAAGGACATACGATTCGGAGTTGAAGCCCGTGCTTTGATGCTTAAGGGTGTAGAAGAACTCGCTGATGCTGTTAAGGTGACAATGGGACCTAAGGGGCGTAATGTTGTTATTGAGCAAAGCTTTGGTGCACCAAAGGTTACAAAGGATGGTGTAACTGTTGCCAAGGGCATTGAGTTCAAGGACAGAGTGAAGAACATGGGTGCTAGCCTTGTCAAACAGGTGGCCAATGCAACTAATGATGCTGCTGGTGATGGTACAACATGTGCGACTGTTCTTACAAGAGCAATTTTTGCTGAAGGATGCAAGTCAGTGGCTGCTGGGATGAATGCAATGGACTTGAGGCGTGGTATTAGTTTGGCTGTTGATACTGTGGTTACCAACCTTAAGAGTAGGGCAAGAATGATCAGTACTTCAGAAGAAATTGCTCAGGTTGGCACTATATCTGCAAATGGAGAGAGAGAGATTGGAGAACTAATTGCGAAAGCAATGGAGAAAGTTGGTAAAGAAGGTGTCATCACGATATCTGATGGTAAAACACTTTACAATGAACTTGAGGTTGTTGAAGGAATGAAACTTGACAGGGGATACATATCACCTTATTTCATCACTAACCAGAAAAACCAAAAATGTGAATTAGAAGACCCCCTCATTTTAATTCATGAGAAAAAAATTTCTAATATCAATGCTGTGGTGAAAGTTCTGGAGCTAGCATTGAAGAGGCAAAAACCTTTACTCATTGTTGCTGAAGATGTAGAAAGCGATGCATTGGCAACATTAATCCTTAACAAGCTTAGAGCTGGAATTAAAGTTTGTGCCATCAAGGCTCCTGGGTTTGGGGAGAACAGGAAAGCTGGTTTGCAGGATCTTGCTGTCCTCACTGGCGGTCAGCTCATCACTGAGGAACTTGGCATGAACCTTGAGAAAATAGAACTTGAAATGCTTGGGGCATGCAAAAAGGTTACAGTTTCAAAAGATGATACCGTTATTCTTGATGGTGCTGGTGACAAAAAGACTATCGAAGAGAGAAGCGATCAGATAAGGTCTGCCATTGAGCTGAGCACTTCTGACTATGATAAGGACAAGCTGCAAGAGAGATTGGCTAAGATCTCTGGTGGTGTTGCTGTTCTAAAGATAGGAGGAGCCAGCGAAGCCGAAGTTAGTGAAAAGAAGGATCGGGTAACTGATGCTCTGAATGCCACCAAGGCTGCGGTTGAGGAGGGAATTGTTCCAGGCGGGGGCGTGGCCCTCCTCTATGCATCCAAGGAGCTGGACAAGCTGCAGACTGCAAATTTCGATCAGAAGATAGGCGTCCAAATTATTCAGTGTGCTTTGAGGACCCCGGTGCACACTATTGCATCCAATGCCGGCGTGGAGGGAGCCGTAGTCGTCGGAAAGCTATTGGAGCAGGATAATCCTGATCTTGGATATGATGCTGCCAAAGGCGAATATGTTGATTTGGTGAAGGCCGGCATTATTGACCCCGTGAAAGTTATTAGAACTGCATTGGTGGATGCTGCAAGCGTATCGTCTTTGATGACTACGACGGAGGCTGTGATTGTGGAGCTGCCAAAGGATGAGAAGGATGCGGTTCCATCTATGGGCGGCGGCGGCATGGGCGGCCTTGATTACTGAAGGAAACTGCCGCCTGCCGAATAATGATGGAGGGTACTATATTATAGATGTATGAGTGAACTTAAAATACTGTTTATCATCTTATCCGTTTTGTCCCATTCAATGCTAAAAGCCAATGAGCAGTCATTTTTTGATTTTCGAGGCCAACTTTTTTATTCATTTGCATGATTATATATTTATGATGTTGCGTGACTGATCCGAGACCAAATTCTTACGCAAAGCTCTATTTCAAGGCTTGAAATTGATGGTTATATTATTTTGTTTGGGC

Network for GWHGAAEX011866

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.23	Cpn60_TCP1	56	557	2.50E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04077	groEL, HSPD1	RNA degradation	map03018
K04077	groEL, HSPD1	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0042026	Biological Process	protein refolding
GO:0006457	Biological Process	protein folding
GO:0005524	Molecular Function	ATP binding
GO:0005737	Cellular Component	cytoplasm

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	147.160
SRP064423	SRR2545915	Juvenile tuber	207.850
SRP108465	SRR5643513	five period of Gastrodia elata	196.220
	SRR5643514	five period of Gastrodia elata	214.070
	SRR5643515	five period of Gastrodia elata	162.830
	SRR5643524	five period of Gastrodia elata	186.300
	SRR5643525	five period of Gastrodia elata	58.390
	SRR5643528	five period of Gastrodia elata	86.920
	SRR5643658	five period of Gastrodia elata	23.070
	SRR5643659	five period of Gastrodia elata	218.060
	SRR5643660	five period of Gastrodia elata	222.610
	SRR5643661	five period of Gastrodia elata	216.690
	SRR5643662	five period of Gastrodia elata	190.640
	SRR5643663	five period of Gastrodia elata	225.930
	SRR5643664	five period of Gastrodia elata	202.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	267.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	345.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	325.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	241.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	223.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	172.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	269.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	257.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	481.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	347.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	382.370
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	382.370
SRP279888	Gastro	Gastrodia elata tuber	246.55
	Juven	Juvenile tuber	271.54
	Mother_Gastro	Mother tuber of Gastrodia elata	38.56
	Mother_Juven	Mother tuber of Juvenile	94.35