Detail information of GWHGAAEX011871/evm.TU.scaffold_4.192
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695077985|ref|XP_009386363.1| | 8.16E-49 | PREDICTED: dehydration-responsive element-binding protein 2C-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q84ZA1|DRE2C_ORYSJ | 5.00E-46 | Dehydration-responsive element-binding protein 2C |
| trEMBL | tr|M0U7H9|M0U7H9_MUSAM | 3.00E-49 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP08690_001} |
| TAIR | AT5G18450 | 8.00E-35 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 3707151 | 3708416 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011871
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 38 | 87 | 5.30E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.810 |
| SRR2545915 | Juvenile tuber | 5.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.640 |
| SRR5643514 | five period of Gastrodia elata | 2.810 | |
| SRR5643515 | five period of Gastrodia elata | 10.880 | |
| SRR5643524 | five period of Gastrodia elata | 1.670 | |
| SRR5643525 | five period of Gastrodia elata | 16.690 | |
| SRR5643528 | five period of Gastrodia elata | 7.930 | |
| SRR5643658 | five period of Gastrodia elata | 8.730 | |
| SRR5643659 | five period of Gastrodia elata | 14.800 | |
| SRR5643660 | five period of Gastrodia elata | 14.880 | |
| SRR5643661 | five period of Gastrodia elata | 12.100 | |
| SRR5643662 | five period of Gastrodia elata | 35.990 | |
| SRR5643663 | five period of Gastrodia elata | 16.640 | |
| SRR5643664 | five period of Gastrodia elata | 144.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.84 |
| Juven | Juvenile tuber | 3.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.61 | |
| Mother_Juven | Mother tuber of Juvenile | 3.55 |