Gene detail

Detail information of GWHGAAEX011880/evm.TU.scaffold_4.202

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|347756860\|ref\|YP_004864422.1\|	8.00E-59	NAD dependent epimerase/dehydratase family protein [Micavibrio aeruginosavorus ARL-13]
KOG	KOG2865	0	NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit
nr	gi\|743836478\|ref\|XP_010936110.1\|	0	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial-like [Elaeis guineensis]
Swissprot	tr\|Q9SK66\|NDUA9_ARATH	0	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (Precursor)
trEMBL	tr\|M0SL13\|M0SL13_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P04460_001}
TAIR	AT2G20360	0	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	3852401	3901234	+

Transcript Sequence
>GWHTAAEX011880 ATTTTCTTGGCTAAAGTCTCGTTTTGGCGGATTGAGATTAGAAGGCAGCCCAACGAAAGCTAATTACCAGGAGCTGTTCTTCAAAGTTTTTTTCATCGAATTTGACTGCTGCTTTCGGCCATCAGGAGAAAAATGGAAGGTTGTTTGAGGCGATTGGGGAAACGATTGCTAAATCCCTCTTATGCGTTTTCATCTTCCTCAAGATCGATTTACCCTCTTTCTACTGGTTATTGTGCCGATTATTCTCGCAATGTATCAACCGTTACTATCAAGGGCGCTGGTAATATCGTCCGCAAGGGCACCGGAGGAAGATCGTCTGTCAGTGGTATTGTTGCAACTGTGTTTGGAGCTACTGGATTTCTTGGTCGCTATGTTGTTCAGCAGCTTGCTAAAATGGGATCTCAAGTTTTGGTTCCTTTTAGAGGTTCTGAAGATTCCCATAGGCACCTCAAGTTGATGGGTGATTTGGGACAGATAGTTCCTATGAAGTACAATCCAAGAGATGAGAAATCAATCAAAGCTGTGATGGCTAAGGCCAATGTTGTTCTTAATCTAATTGGTAGAGATTATGAGACCAGAAATTTTAGTTTTGAAGAAGTACACCATTCCATGGCAGAACATTTGGCAGTGATTGCAAAAGAGCATGGTGGTGTGATGAGATTTATACAAATGTCATGTTTAGGAGCATCTGTGTCATCTCCCTCTAGAATGTTGAAAGCAAAGGCTGCTGCTGAAGAATCTGTACTCCAAGCTTTTCCTGAGGCAACAATTATGCGGCCCAGTACTCTTATCGGCACAGAAGATAGAATTTTGAATAGATGGGCCCAGTTTGTAAAAAAGTGGGGCTTTCTTCCACTTATTGGTGGTGGATCTACCCGGATTCAACCAGTTTATGTTGTAGATGTGGCTGCTGCTATTGTATCCTCATTGAAGGATGATGGTAGGAGTATGGGGAAAATTTATGAGCTTGGTGGACCGGAGATTCTTACTGTGCATGAACTGGCAGAGTTAATGTATGACATGATCCGTGAATGGCCACGATATTTTAATGTTCCTTTTCCAGTTGCAAAGGCAATTGCATCTCCTCGTGAGTTTTTTCTTAAAAAAGTTCCATTCCCTTTACCTACTCCGGCTATATTCAATCTCGATCAGATCAATGCACTCACAGTAGATACTGTCGTATCTGAAAATGCTCTGTCATTCAACGATCTCGACATAGTTCCTCGCAAACTGAAAGGTTACCCAGTGGAGTTCCTCATTTGTTATCGCAAGGATGGCCCCTCTTACGGTACTACTGTTAGTGAAAAAGTGAGGAGCACATACTTGTAGGGTTTTTTGCTCTCCTGCCTCCTGAGCTTCTGCTGCTCCAAATCATGTTCTTTTAATAAGTCCTTGGCTTCCCTATATATATATATATATATATATATAGAAAAGGTATAGGGTTTATAATTATATATTTTGATGTATACTAAATCTTAAGTCCCAAAAAGCCTAAACCTAATAGGCCAACAGTGTGTTAGATTGGCCTTTTTATATAATTTACTCTCAGCCCTTTTATTGTTCATATTCCTCTGTTTAAAGCCAAGGTCAACTTGTGATGATATAAACTATTTTAGTGAGATAATGTTTTGCTCTCAAAATATAATAGATTTCTATTTTTAATTAGATTTTTCTTTGAATTTTTGTATGTTCGATTCGTAGAAACTATAAAAGAGTGTTTAGTGTTTCAAAAATATTTGAATGAG

Network for GWHGAAEX011880

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13460.5	NAD_binding_10	72	223	3.30E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03953	NDUFA9	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Retrograde endocannabinoid signaling	map04723
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	97.430
SRP064423	SRR2545915	Juvenile tuber	100.370
SRP108465	SRR5643513	five period of Gastrodia elata	46.910
	SRR5643514	five period of Gastrodia elata	65.540
	SRR5643515	five period of Gastrodia elata	50.120
	SRR5643524	five period of Gastrodia elata	62.780
	SRR5643525	five period of Gastrodia elata	44.490
	SRR5643528	five period of Gastrodia elata	47.410
	SRR5643658	five period of Gastrodia elata	44.420
	SRR5643659	five period of Gastrodia elata	38.160
	SRR5643660	five period of Gastrodia elata	40.870
	SRR5643661	five period of Gastrodia elata	40.260
	SRR5643662	five period of Gastrodia elata	41.340
	SRR5643663	five period of Gastrodia elata	40.850
	SRR5643664	five period of Gastrodia elata	40.910
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	61.270
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	81.210
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	66.050
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	62.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	67.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	74.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	60.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	70.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	77.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	72.110
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	71.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	71.790
SRP279888	Gastro	Gastrodia elata tuber	40.50
	Juven	Juvenile tuber	42.61
	Mother_Gastro	Mother tuber of Gastrodia elata	35.04
	Mother_Juven	Mother tuber of Juvenile	39.53