Gene detail

Detail information of GWHGAAEX011883/evm.TU.scaffold_4.205

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|311103465\|ref\|YP_003976318.1\|	5.00E-22	pectate lyase family protein [Achromobacter xylosoxidans A8]
nr	gi\|694388723\|ref\|XP_009370039.1\|	0	PREDICTED: probable pectate lyase 8 [Pyrus x bretschneideri]
Swissprot	tr\|Q944R1\|PLY15_ARATH	0	Probable pectate lyase 15 (Precursor)
trEMBL	tr\|A0A078G257\|A0A078G257_BRANA	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}
TAIR	AT1G04680	0	Pectin lyase-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	4031875	4037393	+

Transcript Sequence
>GWHTAAEX011883 CGTTTCCTGGCACTTTCCTGTTGTACAGAGGAAACAAAATAGAATGGGAGAGAAATAGATAGAAAAGAGAGGGAGAAAAATAAGGAGAGCTACTAGAGATAGGGCCACAATTAGGAGCAGAGGGCTGAAAGCAAAGCGAAGGCCATGGCGGCGTCCCTAAAGTGGTTCGCATTGCTCGGATTCTTCGCCTTGATTTTAATCGGGGACCTGTCGCTGATGGAAAGCCAAAATTTCGATGATTCTAGGCACGATCTGCCTCCTAGGAGGAGCTTGAGGGGCGGATCCACCATTAGGGGCAACCCCTCCTCAATCCCATCAAAAAGGGCGGGACAGATCGAAGTGAGAGGGGCAGTCGAAGATCCGGAGTTGGTCGTCTCCATGGTTCAAATGGCAATTAACAAAAGCATGGCTCGCCGGAGGTCGCTGAATTTCTTCTCTTGTGTGACCGGAAATCCAATTGATGATTGCTGGCGGTGCGACCCCAATTGGCACAAGCACCGCAAGCACCTCGCGAACTGCGGGATAGGCTTTGGCCTAAATGCAACTGGTGGCCGCGATGGGCGATACTACGTGGTCACCGACCCCAGCGACGACGACCCGATCAACCCGAAGCCGGGCACCCTCCGGCATGCCGTGATTCAATTTGAGCCCCTGTGGATCATATTCAGGGGGGGCAAGATGACCATCCAGCTTCGGCAGGAGCTCCTCATGAACAGCTTCAAGACCATCGACGGCCGGGGAGCAGATGTCCACATCGCCGGCGGAGGATGCCTCACCGCGCAGTTTGTCAGCAACATTATAATCCACGGGATTCACATCCACGACTGCAAGCCGACGGGGAACGCCATGGTGCGCAGCTCCCCTTCGCACTACGGGTGGCGGACGATGGCCGACGGGGATGCCGTCTCCATCTTTGGTTCCAGCCACATCTGGGTCGATCACTGCTCCCTTTCTCGCTGCGCCGATGGCCTCATCGATGCCGTCATGGGATCCACCGCCATCACCATTTCTAACAATCACATGGCCCATCACAATGAGGTGATGCTTTTGGGGCACAGCGACTCTTACGAAATGGACAGGGCCATGCAGATCACCATCTCCTTCAACCATTTCGGCGCAGGCCTCATTCAGAGGATGCCGAGGTGTCGTCATGGTTATTTCCACGTGGTGAATAATGACTATACCCACTGGGAGATGTATGCCATCGGAGGGAGCGCCAACCCCACCATCAACAGCCAAGGCAACCGATATCTCGCCCCACACGATCGTTTTGCAAAAGAGGTGACAAAGAGGGTGGGGACACAGGAGAGCGAATGGAAGAACTGGAACTGGAGATCAGAAGGGGATCTATTGCTGAACGGCGCGTATTTCGTGACATCGGGCGGAGGGGGCTCTGCGTCCAGCAGCTACTCGAGGGCGTCCAGCCTCGGCGCCAAATCATCTTCCCTGGTGCGCGATATCACTTCCTCCGCCGGCCCTCTTTCCTGCCAACGCGGCCGGCGATGCTGATCAGTATCTTGCAGGTTCTTCGCAGGTTTTTATTCTTACATTTATATAATGGGTTGTTGTTAGGTTACTGAGTCTCCAATTCGTTGTCGTGTGTTTCGGCATGCCGACCTCCGCCGGATCCCGCTGTGTTAAGTCAGCGTGGAGCGGTTTGCGGAAGCGTTGTCGGATTTCCGTAGTGTTCCTCCCTGTTTTATTTCTCGGAGTCTTTTATTTCTCTTGCTCTCTTTGTTTTGTATGAAAACGTGAGCTGCTTGATGCTTTTATCAGTCTGCTGCTCATTTTTAGAGTCCCTTTCTTTGTTTATTTGTTCTGTGTTCATTTTAGTAAATTGCTCGTCATCAATTTGAGCTTTCTAGTAGTTTGTTAATGCA

Network for GWHGAAEX011883

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module5

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00544.18	Pec_lyase_C	186	367	9.90E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01728	pel	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.490
SRP064423	SRR2545915	Juvenile tuber	1.250
SRP108465	SRR5643513	five period of Gastrodia elata	4.390
	SRR5643514	five period of Gastrodia elata	6.780
	SRR5643515	five period of Gastrodia elata	5.040
	SRR5643524	five period of Gastrodia elata	9.540
	SRR5643525	five period of Gastrodia elata	1.220
	SRR5643528	five period of Gastrodia elata	0.470
	SRR5643658	five period of Gastrodia elata	0.670
	SRR5643659	five period of Gastrodia elata	0.210
	SRR5643660	five period of Gastrodia elata	0.260
	SRR5643661	five period of Gastrodia elata	0.380
	SRR5643662	five period of Gastrodia elata	0.450
	SRR5643663	five period of Gastrodia elata	0.260
	SRR5643664	five period of Gastrodia elata	0.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.170
SRP279888	Gastro	Gastrodia elata tuber	0.51
	Juven	Juvenile tuber	1.24
	Mother_Gastro	Mother tuber of Gastrodia elata	1.95
	Mother_Juven	Mother tuber of Juvenile	1.11