Detail information of GWHGAAEX011884/evm.TU.scaffold_4.206
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|116626554|ref|YP_828710.1| | 7.00E-13 | serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] |
| nr | gi|743853403|ref|XP_010940648.1| | 0 | PREDICTED: putative kinase-like protein TMKL1 [Elaeis guineensis] |
| Swissprot | tr|P33543|TMKL1_ARATH | 0 | Putative kinase-like protein TMKL1 (Precursor) |
| trEMBL | tr|A0A059AVT3|A0A059AVT3_EUCGR | 0 | Uncharacterized protein {ECO:0000313|EMBL:KCW58087.1} |
| TAIR | AT3G24660 | 0 | transmembrane kinase-like 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 4050024 | 4052359 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011884
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13855.5 | LRR_8 | 177 | 235 | 1.00E-09 |
| PF07714.16 | Pkinase_Tyr | 333 | 594 | 2.10E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.130 |
| SRR2545915 | Juvenile tuber | 0.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.230 |
| SRR5643514 | five period of Gastrodia elata | 1.430 | |
| SRR5643515 | five period of Gastrodia elata | 0.530 | |
| SRR5643524 | five period of Gastrodia elata | 1.270 | |
| SRR5643525 | five period of Gastrodia elata | 0.280 | |
| SRR5643528 | five period of Gastrodia elata | 0.170 | |
| SRR5643658 | five period of Gastrodia elata | 0.080 | |
| SRR5643659 | five period of Gastrodia elata | 0.870 | |
| SRR5643660 | five period of Gastrodia elata | 0.770 | |
| SRR5643661 | five period of Gastrodia elata | 0.900 | |
| SRR5643662 | five period of Gastrodia elata | 0.740 | |
| SRR5643663 | five period of Gastrodia elata | 0.630 | |
| SRR5643664 | five period of Gastrodia elata | 0.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.320 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.96 |
| Juven | Juvenile tuber | 1.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.01 | |
| Mother_Juven | Mother tuber of Juvenile | 0.78 |