Detail information of GWHGAAEX011889/evm.TU.scaffold_4.212
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|320104319|ref|YP_004179910.1| | 2.00E-19 | metallophosphoesterase [Isosphaera pallida ATCC 43644] |
| KOG | KOG1378 | 0 | Purple acid phosphatase |
| nr | gi|672161487|ref|XP_008800560.1| | 0 | PREDICTED: purple acid phosphatase 23 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q6TPH1|PPA23_ARATH | 0 | Purple acid phosphatase 23 (Precursor) |
| trEMBL | tr|M5XYD6|M5XYD6_PRUPE | 0 | Purple acid phosphatase {ECO:0000256|RuleBase:RU361203} |
| TAIR | AT4G13700 | 0 | purple acid phosphatase 23 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 4120398 | 4139185 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011889
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16656.4 | Pur_ac_phosph_N | 70 | 181 | 1.10E-20 |
| PF00149.27 | Metallophos | 194 | 407 | 2.60E-23 |
| PF14008.5 | Metallophos_C | 475 | 513 | 5.70E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0016787 | Molecular Function | hydrolase activity |
| GO:0003993 | Molecular Function | acid phosphatase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.620 |
| SRR2545915 | Juvenile tuber | 5.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.890 |
| SRR5643514 | five period of Gastrodia elata | 18.510 | |
| SRR5643515 | five period of Gastrodia elata | 16.420 | |
| SRR5643524 | five period of Gastrodia elata | 17.840 | |
| SRR5643525 | five period of Gastrodia elata | 3.470 | |
| SRR5643528 | five period of Gastrodia elata | 3.730 | |
| SRR5643658 | five period of Gastrodia elata | 3.450 | |
| SRR5643659 | five period of Gastrodia elata | 4.930 | |
| SRR5643660 | five period of Gastrodia elata | 4.530 | |
| SRR5643661 | five period of Gastrodia elata | 3.780 | |
| SRR5643662 | five period of Gastrodia elata | 3.450 | |
| SRR5643663 | five period of Gastrodia elata | 3.560 | |
| SRR5643664 | five period of Gastrodia elata | 2.380 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.900 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.63 |
| Juven | Juvenile tuber | 11.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.76 | |
| Mother_Juven | Mother tuber of Juvenile | 7.12 |