Detail information of GWHGAAEX011902/evm.TU.scaffold_4.224


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08292.00E-11960S ribosomal protein L18A
nrgi|743930792|ref|XP_011009655.1|3.03E-124PREDICTED: 60S ribosomal protein L18a-2 [Populus euphratica]
Swissprottr|P51418|R18A2_ARATH5.00E-12060S ribosomal protein L18a-2
trEMBLtr|A9PA10|A9PA10_POPTR2.00E-12360S ribosomal protein L18a {ECO:0000256|PIRNR:PIRNR002190}
TAIRAT2G344802.00E-119Ribosomal protein L18ae/LX family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001143161594320615-
Transcript Sequence

Network for GWHGAAEX011902

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01775.16Ribosomal_L18A71282.60E-54
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02882RP-L18Ae, RPL18A Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms277.450
SRR2545915Juvenile tuber330.950
SRP108465SRR5643513five period of Gastrodia elata386.590
SRR5643514five period of Gastrodia elata420.520
SRR5643515five period of Gastrodia elata371.520
SRR5643524five period of Gastrodia elata416.910
SRR5643525five period of Gastrodia elata241.630
SRR5643528five period of Gastrodia elata274.710
SRR5643658five period of Gastrodia elata220.080
SRR5643659five period of Gastrodia elata366.440
SRR5643660five period of Gastrodia elata336.660
SRR5643661five period of Gastrodia elata355.970
SRR5643662five period of Gastrodia elata294.430
SRR5643663five period of Gastrodia elata301.570
SRR5643664five period of Gastrodia elata274.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1382.650
SRR6049655Rhizomagastrodiae_C368-T10_good_1711.340
SRR6049656Rhizomagastrodiae_C368-T07_good_1489.830
SRR6049657Rhizomagastrodiae_C368-T07_good_1389.840
SRR6049658Rhizomagastrodiae_C368-T04_good_1418.730
SRR6049659Rhizomagastrodiae_C368-T04_good_1414.850
SRR6049660Rhizomagastrodiae_C368-T01_good_1456.980
SRR6049661Rhizomagastrodiae_C368-T04_good_1443.880
SRR6049662Rhizomagastrodiae_C368-T01_good_1571.560
SRR6049663Rhizomagastrodiae_C368-T01_good_1539.640
SRR6049664Rhizomagastrodiae_C368-T10_good_1599.990
SRR6049665Rhizomagastrodiae_C368-T10_good_1599.990
SRP279888GastroGastrodia elata tuber 331.82
JuvenJuvenile tuber427.83
Mother_GastroMother tuber of Gastrodia elata 207.27
Mother_JuvenMother tuber of Juvenile 231.19