Gene detail

Detail information of GWHGAAEX011904/evm.TU.scaffold_4.226

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672109398\|ref\|XP_008789938.1\|	2.70E-30	PREDICTED: tetratricopeptide repeat protein 4 homolog isoform X2 [Phoenix dactylifera]
trEMBL	tr\|M0SHS8\|M0SHS8_MUSAM	9.00E-29	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P25620_001}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	4331977	4359286	+

Transcript Sequence
>GWHTAAEX011904 ATGTATTCAGACAGCTCAACACTACCATGGGACAAAGATATTGCTTACACTCGTGAATCTATTGAATTATACTATCAGGCTGATATGGGAGTAATACTACCGATGAAGCAAGTGCTAGAGTTTCTTCTAGAAGGCACCCTTGCATCACTTGCAGATTGTGGCTATAATGAAGATATGGATGATATTGATCACACTGAAAGGCCAAGTTCATCAAGCTCTGGTAAATGGATAAAGGTGAACGAGAAGAAGACTCTTGATGATATTCTGCGACAGCCGGATTACATAATCCTTGCAATTCCAGTGTTTTTTGTTGTTTCAAAACGCTTAAGTATAGTTATAGCTTGTCTTGTCATTTTCATCAATGCGATGAGCGAAACCGGCCGCGGAAGCCAAAAATCAGGGGTCCGTTACGGTAACCGTTTAAGAGAGTTTCTCCGGCGGAACACCAAGCGGCATTTTGAACAAGCCGCAGCCGTTAAGACCTTCGCGTTCTGTAGAAGCAATGCAAAGGGAGCCGTGCGCTCACACTACTTCTCTCGATCTGTTCGTCTCTCTTCACCGGCAACCCTGCGGCGCAACATAGACATTGCTGGAACAGACTCCGGATATCGCAGAGAACCGCGCATATTCTCCCTTAAGATCATGTATCCACGAGTAAGGGTGAAAGAAAACGACGATTCAGTTTCAAAGAAAGAAGTGGCAACATCATATATATTAAAAGTTGTTGAATCTCTCTCTTTAGAGGGCAATGGTTCTATAAAATCTATTGCTTCAGATCAAAAGAATAGTGTAAAGAGTGGTGATGATCGCAACAGAAGCAATACTAGAGCTAGTTCAATTCCTTTGCATCGAGCATTATCAAACCCAGCTGAGAAGAGCATCAAGGGTGGTGAAAAAGGCAAAAGAAGCAATATCAGAGCCAGTTCAGTTTTGAGGCCTCGTGCAGTCTTGTCAAGCCCAGATAACGATGATATCATTGGGAATCAAAACAAGAGAATTCAAAAGCGCCGGCCATTGACAAACGGACGGGCATCAGGTCTCCCTCGACTCGAATCCGATCCAGATCATCATCGCATTGGGTCATCTCATGAATTAAATTACAATGGAGTGACCAATAGGCATTGCTCTGTAACTGAAAAGACAGGCCAATGCAATACCCTCGACAGAGCTGAGAGGCAGTCTTTCAGCTTATGCACTAGTGATTCGAAGCAATCACAAAATCGAAGAAATGCCACGCCTTCCAGTGCAACTTACAGTGATGGAAGGCTGCAAAGTTTGTCTGATAAGAGGAGCGTCTGCAGTGATCCTGGTGCCAGTATTGGCCATTCCAAGATGCAGTCATTAGGCAGCAGTGATAGAAAGCTCCAAAGCTTGCCCGATAAAAGCAGGACTATCTCCAGTGAGGATCATTCCAGAAAAAACAATCCCAAGATGACATTTTTCAGCTTAAAAACTAGTGATATGGAGCAGTCGCAAAGTTACAGAAACATCACACCTTCCAGGAATAGTTACAGCGACAAAGGCAGGAACACTTTCAGTAATGGCTACCCCAGGATAAAATGTCCAGAGGATATGCTGCCCGAGCTTGAGCCATTTAAACATATTTAG

Network for GWHGAAEX011904

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.820
SRP064423	SRR2545915	Juvenile tuber	10.280
SRP108465	SRR5643513	five period of Gastrodia elata	5.860
	SRR5643514	five period of Gastrodia elata	6.260
	SRR5643515	five period of Gastrodia elata	4.620
	SRR5643524	five period of Gastrodia elata	5.830
	SRR5643525	five period of Gastrodia elata	4.730
	SRR5643528	five period of Gastrodia elata	9.280
	SRR5643658	five period of Gastrodia elata	7.060
	SRR5643659	five period of Gastrodia elata	3.640
	SRR5643660	five period of Gastrodia elata	4.320
	SRR5643661	five period of Gastrodia elata	5.180
	SRR5643662	five period of Gastrodia elata	5.030
	SRR5643663	five period of Gastrodia elata	5.930
	SRR5643664	five period of Gastrodia elata	6.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.520
SRP279888	Gastro	Gastrodia elata tuber	12.78
	Juven	Juvenile tuber	15.40
	Mother_Gastro	Mother tuber of Gastrodia elata	35.47
	Mother_Juven	Mother tuber of Juvenile	25.00