Detail information of GWHGAAEX011908/evm.TU.scaffold_4.230


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|188577994|ref|YP_001914923.1|2.00E-07nuclear protein SET [Xanthomonas oryzae pv. oryzae PXO99A]
KOGKOG10821.00E-134Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing
nrgi|695000235|ref|XP_009410859.1|0PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9FNC7|SUVR2_ARATH5.00E-135Histone-lysine N-methyltransferase SUVR2
trEMBLtr|M0S1J2|M0S1J2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20340_001}
TAIRAT5G439901.00E-134SET-domain containing protein lysine methyltransferase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001144849924504385+
Transcript Sequence

Network for GWHGAAEX011908

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10440.8WIYLD5591.80E-19
PF05033.15Pre-SET4275755.20E-18
PF00856.27SET5957172.70E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySET

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0034968Biological Processhistone lysine methylation
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
GO:0005515Molecular Functionprotein binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.520
SRR2545915Juvenile tuber28.020
SRP108465SRR5643513five period of Gastrodia elata31.080
SRR5643514five period of Gastrodia elata19.980
SRR5643515five period of Gastrodia elata21.790
SRR5643524five period of Gastrodia elata22.200
SRR5643525five period of Gastrodia elata12.230
SRR5643528five period of Gastrodia elata10.200
SRR5643658five period of Gastrodia elata11.230
SRR5643659five period of Gastrodia elata14.340
SRR5643660five period of Gastrodia elata13.920
SRR5643661five period of Gastrodia elata15.610
SRR5643662five period of Gastrodia elata14.470
SRR5643663five period of Gastrodia elata16.560
SRR5643664five period of Gastrodia elata13.410
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.870
SRR6049655Rhizomagastrodiae_C368-T10_good_117.090
SRR6049656Rhizomagastrodiae_C368-T07_good_117.530
SRR6049657Rhizomagastrodiae_C368-T07_good_118.360
SRR6049658Rhizomagastrodiae_C368-T04_good_110.650
SRR6049659Rhizomagastrodiae_C368-T04_good_19.810
SRR6049660Rhizomagastrodiae_C368-T01_good_116.120
SRR6049661Rhizomagastrodiae_C368-T04_good_114.080
SRR6049662Rhizomagastrodiae_C368-T01_good_119.480
SRR6049663Rhizomagastrodiae_C368-T01_good_116.360
SRR6049664Rhizomagastrodiae_C368-T10_good_120.120
SRR6049665Rhizomagastrodiae_C368-T10_good_120.120
SRP279888GastroGastrodia elata tuber 15.07
JuvenJuvenile tuber22.59
Mother_GastroMother tuber of Gastrodia elata 15.36
Mother_JuvenMother tuber of Juvenile 18.60