Gene detail

Detail information of GWHGAAEX011910/evm.TU.scaffold_4.231

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672144927\|ref\|XP_008796367.1\|	1.67E-136	PREDICTED: uncharacterized protein LOC103711847 isoform X2 [Phoenix dactylifera]
trEMBL	tr\|M0U5I5\|M0U5I5_MUSAM	3.00E-107	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP01730_001}
TAIR	AT5G44010	2.00E-43	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	4510737	4568427	+

Transcript Sequence
>GWHTAAEX011910 GACCAAGAACAAGGCCTTTGTATTGACAGCTGCGTTCGTCATTCGTCCTTCTTATCTAGATTATGCGTTCGCGTTTCTCTTCTTCATCAAGATGTCAAAGAGATGTATGATTCTGCTTTGCATGTCGCCTTCCTTCTGCTTGTGTTGGCGACATGCTCATGTCCACTTTCAAGAAAGGGAAACCTGATCTCCGGAAGATCATATCCGCTGTTAAGTACGGCAGTGCAAGCCTTGGCGTCGGAAGTACAATGTCCAAATGTTTTTTAAAGGTTTAAATCTTGTTTTTTCTTTATTTTAATGCGAACTTAGTATTTGTCCCTGTTAAAGTGATACTGAAAAAAAAGTTGTACACGAATGTGATGGAAACTATTTTTGACTTCTTTGAATTCATATAATCTTTAAGTCTAGAAATGATAGCAGACCTGCGGCAAGCCATCAGCTTGCTTAGCTAAGATTATAAATCTGCCTTTTTCTGCTCCGGAAAATCGACCATCATCGTTCGTCGAAAGAAGATGGGCTGGTCTCATCCTTATATTTCAATGGAAGATCTATTGGATCGTATTAAAGGGTTCGTAGACATACTTGTTCTTGCCGCTGGCTACCAATCGTCCGGTCTTCCTGCCATATGGGATGTTGACAACATCAAAAAAGCTGTGAGATGGGGACTTTTCTTTGAAAATGTTTTGGGAAGCTTGCGGATTAATGGTAGTTACGAGGAGTCTGCGAAGGAACTTGATGAAGCTCTGTTTAATTTGAAGTCAGATCCTGTTTTCCCTATAGGTCTTGCGCACATGTCATCGATAGCTCTTTCTAATGCAAGAAGATTTGTTTTAGAACATTTGCTGCATACCAATATTGCAAGAGATGAGCACTTTACCGCTTTTCTTAGAGCTGTTGTTGAGATGGACATTGATGAACTTTCCGAATCTCAAACTGATTGTACAAAGATGTTTATTAAAAGGCTTACATCGCAAATGGAATCACTTAATTTTGCTACAGCAGGAAGAGGATTGACAGACGAGACATTTCCAGAAAATTGCCCCAATGCTTCTAAGCTCTCAGAAAAAGCAGATCAAAATCTTCTTTCTGACCCTAATTTTTATGTTGGAACCAAAGTATGCATTGGTGTTGATACTTCTCTCTTTGTTGCTCAAGAAATTTTTAAAAGGCAAGCGATAATGTCCTGTTTGTCTTCTATTGAGAAAGGTTTAGATGGTTTTTCAGAGATTATTACTGAGAATAAAATGGGATCTGAGAGCCCAATGTTCAAGTGGAACTCATCTGACTGTGCTTTGTCCGATGAAGACCAAATATTGATCGAACTGCAGCACTTTAATCTGTGGAGATCGAAGTGTCTTTTATATTTGCTAGACAAAAGAACCATCAAATTGTTGTCTGGCTTGGAGTTTATTTTTCAAGCACCCAAGGAGCAGTGGATTCGGATTTTTGAAGGGTTAAAAGCTTCAACTGATTCATGTTCTGATAATTTGCTTGAAATTTTGGAAATTTTGCTATTGGGGCTTACTTCAAGCAAATGGAATTATGTAATCCAGGAGATTCTAACAATATCTTGCGATTTCCTGTCCATCTCGAAGAAACTCTTGGATTTGAACGAGTTGCTGCAAAGAAATATCTCGGTTTTGCATTCTAACAAGGAAAATGACATTCTTGAGTATCTGACATCATTACTGAGATCTTGTTCTCATAAACTATGGAAATTACCATCAATTCTTGTAGCAGCTGCAATTCCTACATGGTCAGTTTTATTTAGGACTCATTTGAGTGATGTGGAAAGGCAGTATAATGAACCCTACTCTGCAACCAGTCTACACGGAAGTAAACATCAGGACTGTGAAGTCACTGAAAGGATTCAGAGCCTCTACTTATTTCATATCCGATGTTCTTCTGGAAGACTTTGATATACCAAAGGTCTTGATAAAGGCAGCGGTAAAAGCTCTCCGCCATCACATTGTTCTCTCCCTGTTGGGGTCTCAAAATTCAACACATTATAAATGGGTTGCTCAGGCGTAATTGGTTTGGCTTAGTTTTAGCTCAAACTCAAGCTCAGCTGCCATACCTGAATTGACACTACACTTAAGAAGACTTTGTTTACTTGTTTTTTGCCCATCTCATTTAAGAAATTTTGCAATTATATCTTCTCATCACTTACCTCACTAACATGACAATATATGGTCTTACACAGATCAATGCTTTAGTCTGTCTCCCGACATCTGATGCATTCCACACCATTGCGTACTTTCGTTTGTCGTTTGTCTTTGATGATACTAACTCCTAAAATTTTTTAATTTGATTTAAAATCTTTT

Network for GWHGAAEX011910

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11107.7	FANCF	10	152	1.40E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0036297	Biological Process	interstrand cross-link repair
GO:0043240	Cellular Component	Fanconi anaemia nuclear complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.250
SRP064423	SRR2545915	Juvenile tuber	10.280
SRP108465	SRR5643513	five period of Gastrodia elata	3.070
	SRR5643514	five period of Gastrodia elata	2.680
	SRR5643515	five period of Gastrodia elata	3.010
	SRR5643524	five period of Gastrodia elata	3.300
	SRR5643525	five period of Gastrodia elata	4.900
	SRR5643528	five period of Gastrodia elata	4.530
	SRR5643658	five period of Gastrodia elata	5.560
	SRR5643659	five period of Gastrodia elata	2.070
	SRR5643660	five period of Gastrodia elata	3.650
	SRR5643661	five period of Gastrodia elata	2.960
	SRR5643662	five period of Gastrodia elata	3.490
	SRR5643663	five period of Gastrodia elata	3.180
	SRR5643664	five period of Gastrodia elata	2.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.240
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.390
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.130
SRP279888	Gastro	Gastrodia elata tuber	3.63
	Juven	Juvenile tuber	1.80
	Mother_Gastro	Mother tuber of Gastrodia elata	2.51
	Mother_Juven	Mother tuber of Juvenile	2.61