Gene detail

Detail information of GWHGAAEX011911/evm.TU.scaffold_4.232

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|220919241\|ref\|YP_002494545.1\|	1.00E-25	amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
KOG	KOG1237	0	H+/oligopeptide symporter
nr	gi\|743779677\|ref\|XP_010920311.1\|	0	PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Elaeis guineensis]
Swissprot	tr\|Q9FNL7\|PTR3_ARATH	0	Protein NRT1/ PTR FAMILY 5.2
trEMBL	tr\|A0A067L788\|A0A067L788_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP40370.1}
TAIR	AT5G46050	0	peptide transporter 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	4589272	4597407	-

Transcript Sequence
>GWHTAAEX011911 CTTAGTGCTGTACTCTTAATTTGTATAAGAAGAGTGCTGTGGTAATGGGTGAGTCAGCTGTACTGTCTCTATCTGTCGTCCTCTTATACATACAAACACAGTGAAGCTGCAAGCAAGCAACAGACGGCAGCATAATGGAAACTGGCAGTTCGGAGAAGAACCATCGATCAGATTTCACGGAGGACGGTTCAGTCGATCACAAAGGCAGACCTATTCTCAGATCAAACAGAGGCGGATGGACTGCCTGCTATTTCATAATCCTGTACGAGGTGTTCGAGAGGATGGCTTTCTACGGGATATCTTCGAATCTGGTGGTGTATTTGACGAATAAGCTGCATCAGGGCACAGTCTCCTCAGCCAACAACGTCACCTATTGGATGGGCACCGGCTTCCTCTCCTCAGTCATTGGAGCCTACATCGCAGATGCTCACCTCGGCCGATTTCGAACCTTCTCCGTCTCCTCCGCACTCTATTTCTCGGGAATGTGCTTGCTGACGGCGGCTGTGTCGGTTCCGTCGCTGAAGCCACCGGCCTGCGACGATGGCAGAAAGTGCGAACCGGCGTCTAAGGTTCAGCTCGGGGTCTTCTTCGGCGCGCTGTATGTTCTGGCGTTGGGGACGGGAGGAACCAAGCCAAACGTTTCGACCATCGGGGCGGATCAGTTCGACGAGTTCGACACCAAAGAGAGAGGGGATAAAATCTCCTTCTTCAACTGGTGGATGTTCAGCATCTACCTCGGCACCCTCTTTGCAAATATCATCCTCGTTTATGTCCAGGACAATGTAGGGTGGTCTCTAGGGTATGGGATCCCTACAATTGGACTTGCAGTCTCATTGGTGATCTTCTATGCAGGGACTTCCTTTTACAGGCACAAGGTGCCTCAAGGAAGTCCCTTTACAAAGATGGCGAGAGTTTTGGTTGCTGCACTGAGAAAATGCAGAGAGACTCTGCCCAATGATTCACAGAAGCTTTATGAGCTGGACTCAGTTGAGTACGCGAAGAAAAAAGGGTTCAGAATCCCATCCACAAATTCAATGAGGTTTCTAAACAAAGGCGCAATTATATTAGGCACAAACAGAAATCCCTGGAAACTATGCCCTGTAACTCATATAGAAGAAACAAAGCAGATGCTAAGACTCTTCCCAGTCCTCATTTCCATGTTTATCCCATCCATAATGGCAGCCCAGATAAACACCCTCTTCATTAAGCAAGGCACCACCCTCAACCGCCACATCGGTCCTCACTTCGCAATACCCCCAGCCAGCCTTGCTTCCTTCACCACCATCTCTATGCTCATCACCATCTTCCTCTATGACCGCTACTTCGTCAAAATCATGAGAGCATGGACTAAGAATCCGAGAGGAATCTCTCTTCTTCAAAGACTTGGGGTCGGACTTGTTATCGATATAATAGTAATGGCTGTTGCTTCACTAATAGAGAAAAAAAGACTAAGTGTTGCAAGAGAGCATCCAAGTAATGGAGGTCAAGTGCCGCTAACTATTTTCATTTTGCTTCCTCAGTTTGTGCTGATGGGAGTGGCTGAAGCTTTTCAGGTTGTTGGAAAGATAGATTTCTTTTATAATCAAGCTCCTGAGAGTATGAAGAGTTTGGGGACTGCTTACTCACTGGTTACCTATGGAGTTGGGAGCTTTCTGAGTAGTTTTTTGCTGTCTTTAGTGGCAAATATAACACAGAGAAATGGAAGAACAGGATGGATTCTGAACAATTTGAATGCTTCGCATCTTGATTATTATTTTGGGTTACTGTCGATCTTAAGTTTTTGTAATTTTATCTTTTTTTTGATGGTCTGTAAATTTTATGTGTACAAGCCCGAGTTGTTTAAAACATTGGAAGTGGAGAAGACTGAGCGACAGGAAATAGAGAGCGGAGGCTGATTCTGCTGATTGAGAGCATAAAGGCTGGGAACCTATCAACTTGCTAGAACAGCAAAGTGTATATTGTATACAACAATTATAGAATTTAGAGCCTGACATCATCCTGAAAGTCTTATCATTCTAGATCTCATGGCAATTTGCCTGCATTAAATTAAATCTCATGGCAATTTGATTTAAATTGATTGAAGATACGCATAGTGACCCAAGATTGATTTATCAACTTCTAGTTCATTGTGGAAGATGACTCCCAGCCTATTGCGAGAGCTGCTATAGTTCTCCAATTTCCAGCAAGTGGATGAAGCAGTTCAGTAATCGGCTAAACAAAAGAATGAAATGACTCGAATCAACACTCTCCAAACAGAGGATCCATTTAATTTATTAGTTAGGAGGGCGGCGCAGGTCTAGAGAGAAAATTATTCTTAAAGTAAATCTCATGACTATTTTAATATCATAAAAGAA

Network for GWHGAAEX011911

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00854.20	PTR2	103	528	1.50E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0022857	Molecular Function	transmembrane transporter activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.440
SRP064423	SRR2545915	Juvenile tuber	5.480
SRP108465	SRR5643513	five period of Gastrodia elata	5.680
	SRR5643514	five period of Gastrodia elata	7.350
	SRR5643515	five period of Gastrodia elata	6.770
	SRR5643524	five period of Gastrodia elata	8.680
	SRR5643525	five period of Gastrodia elata	21.710
	SRR5643528	five period of Gastrodia elata	24.400
	SRR5643658	five period of Gastrodia elata	20.110
	SRR5643659	five period of Gastrodia elata	7.020
	SRR5643660	five period of Gastrodia elata	7.170
	SRR5643661	five period of Gastrodia elata	8.860
	SRR5643662	five period of Gastrodia elata	11.110
	SRR5643663	five period of Gastrodia elata	10.040
	SRR5643664	five period of Gastrodia elata	10.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.780
SRP279888	Gastro	Gastrodia elata tuber	12.99
	Juven	Juvenile tuber	8.26
	Mother_Gastro	Mother tuber of Gastrodia elata	20.23
	Mother_Juven	Mother tuber of Juvenile	29.58