Gene detail

Detail information of GWHGAAEX011912/evm.TU.scaffold_4.233

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|256830203\|ref\|YP_003158931.1\|	3.00E-101	cyclopropane-fatty-acyl-phospholipid synthase [Desulfomicrobium baculatum DSM 4028]
nr	gi\|672144904\|ref\|XP_008796355.1\|	0	PREDICTED: uncharacterized protein LOC103711840 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|C3SBS8\|TNMT_ESCCA	3.00E-16	(S)-tetrahydroprotoberberine N-methyltransferase
trEMBL	tr\|A0A067KZG8\|A0A067KZG8_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP40373.1}
TAIR	AT3G23510	0	Cyclopropane-fatty-acyl-phospholipid synthase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	4600621	4728231	-

Transcript Sequence
>GWHTAAEX011912 GTCAATTGGGGGCAGATGTGTGTCTCTATCCGTAGGACATTAAGGCCCCAGTCAACTATACGTTCAAAAGAGTTCCTAAGCACACAAAGAGGAAAGGCAAGAGTTGAAGCGTGGAGAGGAAGAAGGTAAAGGAGGTTAGATCATGCGGGTGGCGGTCGTCGGAAGCGGCATCAGCGGGCTCGCCGCTGCGTACGAGCTCGCAAATGCAGGCATCAAAGTATCTCTCTACGAGAAAGAAGACATTCTCGGCGGCCAGCCCCGCACTGTCACCGTAGAAAGTGTTGACATTGACCTCCAATTTATGGTCTTCAATCGGGTAACATATCCAAATATGATGAACATGTTTGAGACACTGGGCATAGAGATGGAGGTCTCGGACATGTCTTTTTCTGTTAGCTTAAATGGTGGCAATGATTATGAGTGGGGAAGCAGAAAGGGATTGGCTAGTTTATTTTCACAAAAAAGTAACATCGTTAATCCACATTATTGGTACATGCTTCGTGAAATTTCCAAGTTCAAGAATGATGTGATAAGGTATCTTAAGACGCATGAGGGCAACACTTGTATGGATCGGAGTGAAACATTGGAGCTTTTCATAAAATCACATGGATATTCTCATTTATTTCAAAGAGCTTTTCTGATTCCATTATGTGCTTCAATTTGGTCATGTCCTCTTGAACGAGTAATGAATTTCTCTGCATACACGGTGCTGTCATTTTGCTGTAATCATCACCTTTTGCAGCTATTTGGCCAGCCACAGTGGTTCATTGTCAAGTTCCACTCACAAAGCTACATCAATAAGGTAAAAGCAGGGCTGGAGAGTAGATGTTGCCAAATTAAATTAGGATGCGAAGTTAAATCGGTGTCTAGTATTGAGAAAGGCTGCTCTGTTTTAACATCGGACCTCTCCGAAGAATTGTATGATAGATGCATAATTAGCACCCATGCGCCTGATGCTTTGAAAATTATCAAAAGTCAGATAACCCCTGATGAATCAAGAATTCTTGGTGCATTTCAGTATATCTATAGTGATGTATATCTTCACCATGATGGAAATCTGATGCCACAGAACCAATATGCGTGGAGTGCCCGGAATTTTCTTGGGACAAAGGGAAATGGTGTTTTTGTTACTTATTGGCTAAATGTGCTTCAGAATCTTGAATCTACAGGCCCTCCATTTCTTGTAACTCTCAACCCCCCTTGCATTCCAAAGTATGTGGTTATGAAGTGGATCTGTAGCCATCCTGTTCCTTCTGTTGCAGCTTCAAAAGCTTCCCTTGAGCTTGAAAAAATACAGGGAAAAAGAGGAATCTGGTTCTGCGGGGCTTTTCAAGGCTATGGCTTCGAAGAAGATGGAGTCAAGGCTGGATTAGTTGCTGCACGTGATATTCTTGGGAAAGAGCTTAAACTTCTGAAGAGCCCAAAACATATGGTACCTTCTCTAATGGAAGCTGGAATGAGGCTGATAGTAACAAAATTCCTTAATAGTTTTATTTCAACTGGTTCTTTGACGCTGCTTGAAGAAGGAGGTACCATTTTTGTTTTCGAAGGAAAAGAAACTAACAATTGTTGTGTACATATGAAATCTGTACTGAAAGTGCAAAATTCCTCATTTTACTGGAAGATTGCTACAGAAGCTGACATAGGCCTTGCTAGCGCATACATAAATGGCGACTTTTCTTTTGTTGATGAGAAAAATGGTCTGCTGGATCTTCTTTTGGTTCTCATTGCTAATAGAGATCTTAGAAATTTGTCTAACCATAATAACGATAAGAGGGGTTGGTGGACTCCGCTGCTTTTGACATCTGGGATTGCTTCTGCCAAGTATTTTTTCCAACATGTGTCTAGACCAAATAGCACATCACTAGCCCGTCGAAACATATCTCTACATTATGATTTGAGTAATGAGTTCTTCTCACTTTTCTTAGACGAGACAATGCAGTATTCCTGTGCAATTTTTAAGGATGAAGATGAGGAACTACGAGAAGCACAGCTGAGAAAAATCAGAAGTTTGATCGATAAGGCTATGATTAATGAAAGACATCATGTTCTTGAGATTGGCTGTGGGTGGGGAAGTCTGCCTATAGAACTGGTGAAGCGAACAGGGTGCAGATATACTGGCATCACTTTGTCCGTAGAACATCTAAAATATTGTAAAAGAAGAGTTGAGGAAGCTGGATTGGAGGATAGGATAACATTACTTTTGTGTGATTATCGTCAGCTGCCAAGCTCAAAAAGATATGACAGGATAATATCTTGTGAAATGATTGAACATGTTGGTCATGAATACTTTGAAGAATTTTTTTGCTGTTGTGAGGAACTCCTGGCTGATGGTGGACTCTGCGTTCTGCAGTTTATTTATATTCCTGATCAACGATATGAAGAATATAGAAGAAGCTCTGATTTTATAAAAGAGTACATATTTCATGGAGGCTGTCTTCCTTCTTTGAATAGGATAACCTCTGCCATGGCTGCTTCCTCAAAGCTCTGTGTGGAGCACCTGGAAAATGTTGGCATTCATTATTACCAGACGTTGATGCATTGGAGAAAAAATTTATTGTCCAACAAGCACAAGATTCTTTCCCTTGGATTTGACGAAAAATTTATACGCACGTGGGAGTACTATTTTGTGTATTGTGCGGCGGGTTTCAAATCTCGTACACTTGGAGACTATCAGATGGTTTTGTCTCGCCCAGGCAACCTCAAGACTTTCAATAATCCTTTTGAAGGCATTCCAGCTGCTTATTAAAATCTTTAAGAATTTAAGGAAATTATTTATTATTATTGTTGTTGTTGTTGTTATTGTTATATGTTCAGATCTTTGCTATTGTTATAACAAAGTATCAATGCAACAAATGATAATTTTCAATTCATAGCATTGATTGTTTCTTGAGCCTTCAACTTAAGAATTTATGTAACTTCAAATATATTGAATCAAGAAATTATAAAAAAATTGGAAGCATTGCAATGCATTCTGT

Network for GWHGAAEX011912

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01593.23	Amino_oxidase	10	279	3.60E-16
PF02353.19	CMAS	576	841	3.70E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016491	Molecular Function	oxidoreductase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.060
SRP064423	SRR2545915	Juvenile tuber	22.140
SRP108465	SRR5643513	five period of Gastrodia elata	34.860
	SRR5643514	five period of Gastrodia elata	66.210
	SRR5643515	five period of Gastrodia elata	48.840
	SRR5643524	five period of Gastrodia elata	82.970
	SRR5643525	five period of Gastrodia elata	28.050
	SRR5643528	five period of Gastrodia elata	44.400
	SRR5643658	five period of Gastrodia elata	28.440
	SRR5643659	five period of Gastrodia elata	19.210
	SRR5643660	five period of Gastrodia elata	16.750
	SRR5643661	five period of Gastrodia elata	14.770
	SRR5643662	five period of Gastrodia elata	16.370
	SRR5643663	five period of Gastrodia elata	15.940
	SRR5643664	five period of Gastrodia elata	12.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.860
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.270
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.540
SRP279888	Gastro	Gastrodia elata tuber	12.95
	Juven	Juvenile tuber	29.19
	Mother_Gastro	Mother tuber of Gastrodia elata	153.04
	Mother_Juven	Mother tuber of Juvenile	166.72