Detail information of GWHGAAEX011914/evm.TU.scaffold_4.235
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256830203|ref|YP_003158931.1| | 1.00E-94 | cyclopropane-fatty-acyl-phospholipid synthase [Desulfomicrobium baculatum DSM 4028] |
| nr | gi|743836166|ref|XP_010936014.1| | 0 | PREDICTED: uncharacterized protein LOC105055750 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|C3SBS8|TNMT_ESCCA | 5.00E-17 | (S)-tetrahydroprotoberberine N-methyltransferase |
| trEMBL | tr|F6H8S1|F6H8S1_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB48613.1} |
| TAIR | AT3G23510 | 0 | Cyclopropane-fatty-acyl-phospholipid synthase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 4744526 | 4783832 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011914
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01593.23 | Amino_oxidase | 11 | 272 | 1.10E-16 |
| PF02353.19 | CMAS | 570 | 842 | 1.70E-78 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.720 |
| SRR2545915 | Juvenile tuber | 6.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.180 |
| SRR5643514 | five period of Gastrodia elata | 0.510 | |
| SRR5643515 | five period of Gastrodia elata | 0.300 | |
| SRR5643524 | five period of Gastrodia elata | 0.440 | |
| SRR5643525 | five period of Gastrodia elata | 0.060 | |
| SRR5643528 | five period of Gastrodia elata | 0.030 | |
| SRR5643658 | five period of Gastrodia elata | 0.040 | |
| SRR5643659 | five period of Gastrodia elata | 0.150 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.030 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.040 | |
| SRR5643664 | five period of Gastrodia elata | 0.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.830 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.720 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.78 |
| Juven | Juvenile tuber | 0.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.03 | |
| Mother_Juven | Mother tuber of Juvenile | 0.50 |