Detail information of GWHGAAEX011917/evm.TU.scaffold_4.240
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|410665764|ref|YP_006918135.1| | 2.00E-14 | hypothetical protein M5M_16375 [Simiduia agarivorans SA1 = DSM 21679] |
| nr | gi|743836158|ref|XP_010936012.1| | 0 | PREDICTED: protein ECERIFERUM 1-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|F4HVY0|CER1_ARATH | 0 | Protein ECERIFERUM 1 |
| trEMBL | tr|M0S1J6|M0S1J6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20380_001} |
| TAIR | AT2G37700 | 0 | Fatty acid hydroxylase superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 4947161 | 4982687 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011917
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04116.12 | FA_hydroxylase | 143 | 277 | 1.70E-20 |
| PF12076.7 | Wax2_C | 457 | 623 | 8.80E-66 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15404 | K15404, CER1 | Biosynthesis of secondary metabolites | map01110 |
| Synthesis and degradation of ketone bodies | map00072 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008610 | Biological Process | lipid biosynthetic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005506 | Molecular Function | iron ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.580 |
| SRR5643514 | five period of Gastrodia elata | 1.090 | |
| SRR5643515 | five period of Gastrodia elata | 0.820 | |
| SRR5643524 | five period of Gastrodia elata | 0.570 | |
| SRR5643525 | five period of Gastrodia elata | 2.140 | |
| SRR5643528 | five period of Gastrodia elata | 1.240 | |
| SRR5643658 | five period of Gastrodia elata | 0.940 | |
| SRR5643659 | five period of Gastrodia elata | 0.670 | |
| SRR5643660 | five period of Gastrodia elata | 1.190 | |
| SRR5643661 | five period of Gastrodia elata | 0.380 | |
| SRR5643662 | five period of Gastrodia elata | 2.190 | |
| SRR5643663 | five period of Gastrodia elata | 0.150 | |
| SRR5643664 | five period of Gastrodia elata | 0.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.61 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.61 | |
| Mother_Juven | Mother tuber of Juvenile | 0.24 |