Detail information of GWHGAAEX011922/evm.TU.scaffold_4.245
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428769111|ref|YP_007160901.1| | 2.00E-64 | Polyamine oxidase [Cyanobacterium aponinum PCC 10605] |
| KOG | KOG0029 | 0 | Amine oxidase |
| nr | gi|672112138|ref|XP_008804237.1| | 0 | PREDICTED: probable polyamine oxidase 4 [Phoenix dactylifera] |
| Swissprot | tr|Q8H191|PAO4_ARATH | 0 | Probable polyamine oxidase 4 |
| trEMBL | tr|J3M2I6|J3M2I6_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB04G36110.1} |
| TAIR | AT1G65840 | 0 | polyamine oxidase 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 5078577 | 5085321 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011922
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01593.23 | Amino_oxidase | 38 | 457 | 1.30E-84 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K17839 | PAO4, PAO3, PAO2 | Metabolic pathways | map01100 |
| Arginine and proline metabolism | map00330 | ||
| beta-Alanine metabolism | map00410 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.560 |
| SRR2545915 | Juvenile tuber | 8.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.290 |
| SRR5643514 | five period of Gastrodia elata | 21.180 | |
| SRR5643515 | five period of Gastrodia elata | 24.150 | |
| SRR5643524 | five period of Gastrodia elata | 25.760 | |
| SRR5643525 | five period of Gastrodia elata | 30.680 | |
| SRR5643528 | five period of Gastrodia elata | 51.960 | |
| SRR5643658 | five period of Gastrodia elata | 31.090 | |
| SRR5643659 | five period of Gastrodia elata | 13.090 | |
| SRR5643660 | five period of Gastrodia elata | 14.950 | |
| SRR5643661 | five period of Gastrodia elata | 13.510 | |
| SRR5643662 | five period of Gastrodia elata | 17.170 | |
| SRR5643663 | five period of Gastrodia elata | 14.550 | |
| SRR5643664 | five period of Gastrodia elata | 17.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.56 |
| Juven | Juvenile tuber | 9.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 61.83 | |
| Mother_Juven | Mother tuber of Juvenile | 49.11 |