Detail information of GWHGAAEX011924/evm.TU.scaffold_4.247
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|152996457|ref|YP_001341292.1| | 2.00E-32 | 2OG-Fe(II) oxygenase [Marinomonas sp. MWYL1] |
| KOG | KOG0143 | 8.00E-88 | Iron/ascorbate family oxidoreductases |
| nr | gi|743834177|ref|XP_010935462.1| | 4.63E-141 | PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Elaeis guineensis] |
| Swissprot | tr|O49561|G2OX8_ARATH | 6.00E-113 | Gibberellin 2-beta-dioxygenase 8 |
| trEMBL | tr|B9RY49|B9RY49_RICCO | 3.00E-138 | Gibberellin 20-oxidase, putative {ECO:0000313|EMBL:EEF43741.1} |
| TAIR | AT4G21200 | 8.00E-88 | gibberellin 2-oxidase 8 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 5121245 | 5133606 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011924
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module12 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 98 | 195 | 5.80E-16 |
| PF03171.19 | 2OG-FeII_Oxy | 255 | 350 | 1.30E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04125 | E1.14.11.13 | Biosynthesis of secondary metabolites | map01110 |
| Diterpenoid biosynthesis | map00904 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 65.980 |
| SRR2545915 | Juvenile tuber | 11.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 41.590 |
| SRR5643514 | five period of Gastrodia elata | 8.830 | |
| SRR5643515 | five period of Gastrodia elata | 18.680 | |
| SRR5643524 | five period of Gastrodia elata | 11.960 | |
| SRR5643525 | five period of Gastrodia elata | 9.340 | |
| SRR5643528 | five period of Gastrodia elata | 7.470 | |
| SRR5643658 | five period of Gastrodia elata | 7.660 | |
| SRR5643659 | five period of Gastrodia elata | 1.930 | |
| SRR5643660 | five period of Gastrodia elata | 1.400 | |
| SRR5643661 | five period of Gastrodia elata | 1.210 | |
| SRR5643662 | five period of Gastrodia elata | 9.680 | |
| SRR5643663 | five period of Gastrodia elata | 4.390 | |
| SRR5643664 | five period of Gastrodia elata | 8.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.780 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 56.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 41.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.18 |
| Juven | Juvenile tuber | 2.26 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 95.27 | |
| Mother_Juven | Mother tuber of Juvenile | 34.38 |