Detail information of GWHGAAEX011925/evm.TU.scaffold_4.248
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672112083|ref|XP_008803983.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Phoenix dactylifera] |
| Swissprot | tr|Q0WPZ6|PP158_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g17140 |
| trEMBL | tr|M0U2Z0|M0U2Z0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P23830_001} |
| TAIR | AT2G17140 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 5135005 | 5137812 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011925
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 116 | 139 | 0.98 |
| PF13041.5 | PPR_2 | 146 | 195 | 6.40E-14 |
| PF12854.6 | PPR_1 | 213 | 245 | 3.00E-12 |
| PF12854.6 | PPR_1 | 249 | 280 | 2.90E-07 |
| PF01535.19 | PPR | 294 | 324 | 0.11 |
| PF13041.5 | PPR_2 | 330 | 375 | 5.50E-15 |
| PF13041.5 | PPR_2 | 397 | 443 | 5.80E-13 |
| PF12854.6 | PPR_1 | 466 | 490 | 5.60E-07 |
| PF12854.6 | PPR_1 | 522 | 552 | 3.00E-12 |
| PF13041.5 | PPR_2 | 559 | 606 | 1.30E-14 |
| PF13041.5 | PPR_2 | 630 | 678 | 7.10E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.520 |
| SRR2545915 | Juvenile tuber | 10.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.630 |
| SRR5643514 | five period of Gastrodia elata | 5.660 | |
| SRR5643515 | five period of Gastrodia elata | 9.390 | |
| SRR5643524 | five period of Gastrodia elata | 7.990 | |
| SRR5643525 | five period of Gastrodia elata | 3.550 | |
| SRR5643528 | five period of Gastrodia elata | 2.440 | |
| SRR5643658 | five period of Gastrodia elata | 1.840 | |
| SRR5643659 | five period of Gastrodia elata | 8.490 | |
| SRR5643660 | five period of Gastrodia elata | 10.280 | |
| SRR5643661 | five period of Gastrodia elata | 9.220 | |
| SRR5643662 | five period of Gastrodia elata | 9.140 | |
| SRR5643663 | five period of Gastrodia elata | 7.890 | |
| SRR5643664 | five period of Gastrodia elata | 7.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 89.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 103.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 51.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 83.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 34.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.17 |
| Juven | Juvenile tuber | 9.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.42 | |
| Mother_Juven | Mother tuber of Juvenile | 16.76 |