Detail information of GWHGAAEX011926/evm.TU.scaffold_4.249
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3004 | 2.00E-61 | Meiotic chromosome segregation protein |
| nr | gi|743834158|ref|XP_010935457.1| | 2.14E-94 | PREDICTED: TIMELESS-interacting protein [Elaeis guineensis] |
| trEMBL | tr|M0SEH1|M0SEH1_MUSAM | 2.00E-92 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P14040_001} |
| TAIR | AT3G02820 | 2.00E-61 | zinc knuckle (CCHC-type) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 5141188 | 5147477 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011926
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00098.22 | zf-CCHC | 14 | 30 | 3.80E-08 |
| PF07962.11 | Swi3 | 76 | 157 | 1.30E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006974 | Biological Process | cellular response to DNA damage stimulus |
| GO:0048478 | Biological Process | replication fork protection |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.000 |
| SRR2545915 | Juvenile tuber | 5.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.820 |
| SRR5643514 | five period of Gastrodia elata | 5.430 | |
| SRR5643515 | five period of Gastrodia elata | 6.200 | |
| SRR5643524 | five period of Gastrodia elata | 5.020 | |
| SRR5643525 | five period of Gastrodia elata | 11.600 | |
| SRR5643528 | five period of Gastrodia elata | 8.980 | |
| SRR5643658 | five period of Gastrodia elata | 9.490 | |
| SRR5643659 | five period of Gastrodia elata | 9.990 | |
| SRR5643660 | five period of Gastrodia elata | 8.250 | |
| SRR5643661 | five period of Gastrodia elata | 8.990 | |
| SRR5643662 | five period of Gastrodia elata | 7.930 | |
| SRR5643663 | five period of Gastrodia elata | 5.720 | |
| SRR5643664 | five period of Gastrodia elata | 5.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.33 |
| Juven | Juvenile tuber | 2.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.59 | |
| Mother_Juven | Mother tuber of Juvenile | 1.01 |