Gene detail

Detail information of GWHGAAEX011934/evm.TU.scaffold_4.258

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4791	8.00E-54	Uncharacterized conserved protein
nr	gi\|743883509\|ref\|XP_010909437.1\|	1.98E-95	PREDICTED: zinc finger CCCH domain-containing protein 32-like [Elaeis guineensis]
Swissprot	tr\|Q6K977\|C3H19_ORYSJ	1.00E-66	Zinc finger CCCH domain-containing protein 19
trEMBL	tr\|M5XNI5\|M5XNI5_PRUPE	7.00E-77	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23073.1}
TAIR	AT2G02160	8.00E-54	CCCH-type zinc finger family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	5305312	5309264	+

Transcript Sequence
>GWHTAAEX011934 ATGGAATCTGGCACTGGGCGGATCGATCCACGATCTTTGACGAGGGAGGAGGAGGCTGTTAAGCGGAATACTGATTGCGTTTACTTTCTGGCTTCGCCATTGACTTGCAAAAAGGGAAGTGAGTGCGAGTATCGCCACAGCGAGGGTGCCAGGATTAACCCAAGAGACTGCAAATTCTGGTTTAGCGGCAGCTGCTTGAATCCAAAATGCCTGTTTCGTCATCCGCCGTTTGATGTCCCAGCCGGAAATTCTATGGCTGCATCAGGGCAGATCATGGCTTCTTCACATGGGATCGCTTCCACTCACTTATCGAGCAGAAGCAGTGTTCCTTGTTATTATTTTCAGAAGGGCACCTGTTTGAAAGGTGACAAGTGTCCTTTTCTGCATGAACCACAGTCTGCAGGCAATCCCAAAAAGGACGCTTGGAAAGACAACAAATGCATCCCTCAGCAGCAGATTTCCCAAAGTAAGGGGAGCTTTGTAAAGCCTCATAATGGCGCTCCTTCAGAAGAAGGCATCATAGCTTTCCAAAATGCTAGCAATCATACCATTCAGCCTGATAGGCGTCATTTGAAGGAGAGGGAAGCTGGCGAAATTGCAGGGGAACGCTCTGAACTTGGCCCCACCAAATCGAAGAGGCCGTTAGCTTCCCAACTCCGGACTTCGAGTGTTGAAGGTGCATTTCGAGAGCGGTCGCCCGCATTTGATGTTCTCGTTGATAATGCAGGGAGGGATTCTGGTGGCCGACATGACGAATATGATTTCCGGGGAGGATCCATTACAAGCCATGGAGATGGGTTTGGCCGATCTGCGGATAGGAATAAACTCGACGAATCCAGCGAGTTTCAGCATCACGGAAAGGTGCAGAATGGTGGCGGCGAAGACCGATGCGGAGCTTCTTTATCTGAGAGGATCATTGATAAACCGATGCCATTTGATCGAAGAGTGGCGGCTCTCAGACTCCGGAGACCAGATGGAATTGATGAATCGGATCTTCGCTATAGGCTTATGAAACAGAGAAGGCTAAACAGCTCTTTATCTGCTACTGTGTCAGGCCGAGAAACTGACCCTGAAAGGACTCAGCCTTCTCCAGAAACCACCATTAGCAGCCGGTTGCGAGGTAGAATAACACTCCCCGATTCGCAGGGTGGAGGCAGAGAGTGGCAAAGAGGCAAATCGTCGCCCCAAATGATGACTTCAACTGTAAGGGGAAGGGTTGGAGAGAGACTGGGTCGGATTTTTGTCGAGAATTCCTTGGGCAATTCCCTGAACGTTGGAAGCCAGGCAAAGGCAGTGGATCCTCTAGGCTTTGCCGGCCCTAGAAGCCTAGCGGAGTTGATGGGTTCTAAAGCTGAAGAATATTCTCGGGACCGGTCAGCTAAGAATGCTCCATTCGGGCCACTAGAGTCTGAGGCTTCTGCCGAATTCGACGGCCCGAAACCATTGAGCGCCCTTTTGAAGAGGAAGAGAGAGGCTGCGCTTGAGAATGATGCGGCTACCGTGCAGCTTGAAGCCAACTCAGAAGCCAGTAAAGCTATTTCCGTTGTAGGGAGAGTTTCTGAAGAAGATGGAGAAGAAGATGAGGAGATTGCTCACAATCCCGTGGCTGCGGTTCAGGCTGCAGAAGAGGGAGATGCAGTTGAGGATGAAGGACTGGATTATGCGGATCAGAGAGATGGCGAATATGATTATGAGCCGGCTGACGGTGGTTATGAAAACTCGAACATAATGAATGTAGACAATGAAGAAGAAGAAGAGGAAGATGAAGATGACTTTGCTAAAAAGATTGGCCTCATTTTCTCTTAG

Network for GWHGAAEX011934

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15663.4	zf-CCCH_3	21	75	2.60E-11
PF00642.23	zf-CCCH	109	130	0.00016

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.140
SRP064423	SRR2545915	Juvenile tuber	73.200
SRP108465	SRR5643513	five period of Gastrodia elata	56.060
	SRR5643514	five period of Gastrodia elata	43.330
	SRR5643515	five period of Gastrodia elata	34.090
	SRR5643524	five period of Gastrodia elata	38.680
	SRR5643525	five period of Gastrodia elata	31.970
	SRR5643528	five period of Gastrodia elata	32.020
	SRR5643658	five period of Gastrodia elata	28.040
	SRR5643659	five period of Gastrodia elata	76.360
	SRR5643660	five period of Gastrodia elata	85.480
	SRR5643661	five period of Gastrodia elata	78.830
	SRR5643662	five period of Gastrodia elata	106.140
	SRR5643663	five period of Gastrodia elata	106.170
	SRR5643664	five period of Gastrodia elata	129.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	54.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	60.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	60.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	47.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	57.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.510
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.810
SRP279888	Gastro	Gastrodia elata tuber	112.67
	Juven	Juvenile tuber	144.41
	Mother_Gastro	Mother tuber of Gastrodia elata	51.95
	Mother_Juven	Mother tuber of Juvenile	110.83