Detail information of GWHGAAEX011935/evm.TU.scaffold_4.259
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743852077|ref|XP_010940303.1| | 2.97E-43 | PREDICTED: psbQ-like protein 2, chloroplastic isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9SGH4|PQL2_ARATH | 3.00E-23 | PsbQ-like protein 2, chloroplastic (Precursor) |
| trEMBL | tr|M0S6Y5|M0S6Y5_MUSAM | 2.00E-36 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P10940_001} |
| TAIR | AT3G01440 | 1.00E-22 | PsbQ-like 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 5325323 | 5337721 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011935
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05757.10 | PsbQ | 3 | 115 | 3.40E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08901 | psbQ | Photosynthesis | map00195 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015979 | Biological Process | photosynthesis |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0009523 | Cellular Component | photosystem II |
| GO:0009654 | Cellular Component | photosystem II oxygen evolving complex |
| GO:0019898 | Cellular Component | extrinsic component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.450 |
| SRR2545915 | Juvenile tuber | 21.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.400 |
| SRR5643514 | five period of Gastrodia elata | 32.260 | |
| SRR5643515 | five period of Gastrodia elata | 26.090 | |
| SRR5643524 | five period of Gastrodia elata | 24.590 | |
| SRR5643525 | five period of Gastrodia elata | 74.670 | |
| SRR5643528 | five period of Gastrodia elata | 73.900 | |
| SRR5643658 | five period of Gastrodia elata | 73.320 | |
| SRR5643659 | five period of Gastrodia elata | 29.790 | |
| SRR5643660 | five period of Gastrodia elata | 26.320 | |
| SRR5643661 | five period of Gastrodia elata | 34.370 | |
| SRR5643662 | five period of Gastrodia elata | 27.650 | |
| SRR5643663 | five period of Gastrodia elata | 30.680 | |
| SRR5643664 | five period of Gastrodia elata | 25.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.33 |
| Juven | Juvenile tuber | 15.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.43 | |
| Mother_Juven | Mother tuber of Juvenile | 14.04 |