Gene detail

Detail information of GWHGAAEX011936/evm.TU.scaffold_4.260

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|158334549\|ref\|YP_001515721.1\|	oligopeptidase A [Acaryochloris marina MBIC11017]
KOG	KOG2089	Metalloendopeptidase family - saccharolysin & thimet oligopeptidase
nr	gi\|743834245\|ref\|XP_010935479.1\|	PREDICTED: probable cytosolic oligopeptidase A [Elaeis guineensis]
Swissprot	tr\|Q94AM1\|OOPDA_ARATH	Organellar oligopeptidase A, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|I1L4U3\|I1L4U3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G33490.1}
TAIR	AT5G65620	Zincin-like metalloproteases family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	5390000	5454928	+

Transcript Sequence
>GWHTAAEX011936 CTTGTGCAACTCGCTTATAAAATAATCAATTTACACTTTGGGACAATCGCAAATACAAATTTTTTTTTAATAACATCTCAAATTCAATTAGAGGGACATAGTTTTTGGCGTTTTGTTTGTACTCAGCCAAGAACGCATTGGGACACCACGTAGAGATACATTCTAACGTGCGAGAGCGGCAGCAGTAAAAATGAACCGGCCATTTTCGACCCGTTCAGGTCTTATAAGCGCCAAACTCATCGTGATGGCGACGCTCATATCCTTTATTTGTTCCGCCCCTCTTCTCCGATCCGCATCGCAGGTTGCTCTTCTACTCTCCACCAGAACGCTCCCTAAATCTAGCATCTGCCCCTTGTGGTCCTCTTCCTTCTCCGGCTGTATCCTCCTGCCGCGCAAGCCCGCCTCTTCCCTTATCTCCGCTGGTTTTTGCTCCTTCACTTCGCCAACAATGGCTTCTCCTCCGGCCGACGAAAGCTTCGATTCGAACCCTCTACTTCGCGACTTCGACTTCCCGCCCTTCGACGCTGTCGAGGCGAAGCACGTCCGGCCAGGAATCAGGGAGCTTTTAAGGAGCCTGGAGGGCGATCTGGTGGAACTGGAGAGGGCTGTGGAGCCAACGTGGCCCAAGCTGGTGGAGCCGCTTGAGAGGATTGTGGATAGGTTGCAGGTTGTGTGGGGGATCGTGAATCATCTTAAATCTGTTAAGGATTCCTCGGAGCTTCGATCTGCCATTGAGGAAGTGCAGCCAGAGAAGGTTAAATTCCAGCTTAGACTGGGACAAAGTAAACCAATATATAATGCATTCAAGGCGATTCAGGATTCCACATCTTGGTCATCTCTTTCTGATGCTCATAAAAGAATTGTAGAAGCGCAAGTTAAGGAAGCTATTCTAAATGGTGTTGCTCTTGATGATCAGAAGCGAACAAAATTCAATGAAATTGAGCAGGAACTTGAAAAGTTATCCCAAAAATTTAGTGAAAATGTCTTGGATGCTACCAAGAAGTTTGAAAAGTTGATCACTGATAAAAAGGAACTTGAAGGGCTGCCTGCTACAGCTCTTGGACTATTTGCAGTAACTGCCCAATCCAAGGGTCATGAAAATGCTTCTGCAGAAAGTGGACCTTGGATTATAACATTAGATCATCCAAGTTTTTTTGCTGTAATGCAACATGCTCAGAATCGATCTTTGCGTGAGGAAGTATATCGTGCTCATATTAGTCGTGCTTCCCATGGAGATTTGGATAATACTCCAATTATTGATCAAATTTTGAAGTTAAGATTGGAGAAATCTAAGCTACTTGGATATAATAATTATGCTGAGGTAAGCATGTCAATGAAGATGGCTACGATTGAGTCAGCAGAAAATCTTATTGAAAAACTGCGCAAAGCATCTTGGGATCCTGCAGTTAAAGACCTTGAAGACCTTAGAAAATTTGCTGCAGAGAAAACTGGTGCAGATGCTAATGATTTAAGCCACTGGGACATTAGTTTTTGGAGTGAAAGACTTCGTGAATCAAAATTTGACATCAATGAGGAAGAGTTGCGTCAATATTTTTCACTTCGTAAGGTCACGGAGGGCCTTTTCAATCTTGCAAATAAACTTTTTGAAATCAACATTGAACCAGCTGATGGTTTGGCTCCAGTTTGGCATGCTGATGTGAGATTCTATTGCGTTAAGGATACTTCAGGTAATCCAATCGCATACTTCTATTTTGACCCATTCTCCCGGCCTTCTGAAAAGAAAGAAGGAGCTTGGATGGATGAGGTATTTTCTCGCAGTCGGGTGCTTGCGCGGGATGGAAACTTGGTTAGGCTACCCATTGCTCACATGGTGTGCAATCAAATACCACCAGTGGGAGAAAAACCTAGCCTTATGACTTTCCGAGAGGTCGAGACTGTTTTTCATGAATTTGGCCATGCACTGCAACATATGCTGACTAAACAAGACGATGGGTTGGTAGCTGGAATTAGAGGAATAGAATGGGATGCTGTAGAACTTCCCTCTCAGTTTATGGAAAACTGGTGTTATCAGAGGGATACTCTATTAAGCATTGCAAAACATTATGAAACTGGAGAATCTCTACCTGAAGATGTTTATCAAAAACTTATAGCTGCAAAAACGTTTCGTGCTGGCTCTTTGAGTCTTCGTCAGCTACGGTTTGCTAGCCTAGATTTGGAACTGCATACAAATTATAATCCTGGCGGGCTTGAATCAGTCTATGATGTGGATCAAAGAGTAGCAAGGAAAACGCAAGTTATTCCTCCCTTGTTAGAGGACAGATTTCTTTGCAGTTTCAGCCATATATTTGCAGGTGGATATGCAGCTGGATACTACAGTTACAAGTGGGCTGAAGTGCTTTCAGCAGATGCTTTTTCGGCATTTGAGGATAGTGGGTTGAACGATGACAAGGCTATTAAGGAAACCGGTCATAAGTTCCGAGAAACTATTCTTGCTTTCGGAGGCGGCAAACCTCCACTTGAGGTTTTCGTCGAATTTCGAGGACGGGAGCCCTCTCCTGAGGCTCTGCTGAGGCACAATAACTTGTTACCTGTCGCTGCTTAAAAGCTGATCTCCTTCCCAACCCAACACTTCCTTTCGGCTTCAAATAACTAAAACTGTTGAGTATCGCATATCAAATAAATCCAATTATAAACCTATATTTATTTCATCTTAAATGATGGTTAATATTATTATTATTTTCTCAATTTTGTGTGTTTTGTCCCTTGTGTAGTATTCCAGTAGGTTGTTCATTTACTGATCTGGAGTTCATCTGAATCTGGAATCCAGTCTTTTTTTAGCATATTTTCAAATGAAAACTATTATTGGCTCCTCCCCAAAAGATTGGATGATTAGTATTTGCATTTTAAATATTTTTTCTTAGTGGGCTTAAAGTGGATTTAATGCTGGTTTTTTGTGAGAAAAAGATGTTTTTTTTTTTTAAATGATTATTTTTTTCTTATGTTAGAACAACATTAAAATGAAAACTATGAAGTTTTTTAGTTTCAATTTTTGGTTGATTTTATATAAAAAAGATTTTAAATGTAAAATGGTGGTCTTAATGGATGTTTGTATAAATGTGCAGTAACTAAATTGGTTTATGTTGAGGCTAAATTGAGCCTTAGTGCCTTTTGTGTGGTTTCATGCTGTCTCTATGGCTCGTCTCCCCCACATTGCTTGCTCATCGTTTGCTTCA

Network for GWHGAAEX011936

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01432.19	Peptidase_M3	324	784	2.00E-133

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0004222	Molecular Function	metalloendopeptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	75.390
SRP064423	SRR2545915	Juvenile tuber	78.450
SRP108465	SRR5643513	five period of Gastrodia elata	101.570
	SRR5643514	five period of Gastrodia elata	116.530
	SRR5643515	five period of Gastrodia elata	88.890
	SRR5643524	five period of Gastrodia elata	93.330
	SRR5643525	five period of Gastrodia elata	29.220
	SRR5643528	five period of Gastrodia elata	31.980
	SRR5643658	five period of Gastrodia elata	29.690
	SRR5643659	five period of Gastrodia elata	46.770
	SRR5643660	five period of Gastrodia elata	40.330
	SRR5643661	five period of Gastrodia elata	47.580
	SRR5643662	five period of Gastrodia elata	37.590
	SRR5643663	five period of Gastrodia elata	41.450
	SRR5643664	five period of Gastrodia elata	37.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	132.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	180.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	127.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	89.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	77.220
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	71.020
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	67.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	66.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	129.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	117.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	216.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	216.520
SRP279888	Gastro	Gastrodia elata tuber	42.27
	Juven	Juvenile tuber	84.05
	Mother_Gastro	Mother tuber of Gastrodia elata	37.07
	Mother_Juven	Mother tuber of Juvenile	63.49