Gene detail

Detail information of GWHGAAEX011938/evm.TU.scaffold_4.262

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|83311600\|ref\|YP_421864.1\|	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Magnetospirillum magneticum AMB-1]
KOG	KOG1176	Acyl-CoA synthetase
nr	gi\|672111980\|ref\|XP_008803433.1\|	PREDICTED: probable acyl-activating enzyme 5, peroxisomal [Phoenix dactylifera]
Swissprot	tr\|Q9FFE9\|AAE6_ARATH	Probable acyl-activating enzyme 6
trEMBL	tr\|A0A096RNQ3\|A0A096RNQ3_MAIZE	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G105330_P01}
TAIR	AT5G16340	AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	5472684	5475060	-

Transcript Sequence
>GWHTAAEX011938 GTTCGATGTAAAACACATACATCCATAATAAGAAGAGGAAAATAAAGCTTCTTACATAGTTCAAAATATGTCAGCTATAAACAAAAAAACAAATTTTCCTATCTCTCACAAAAAAATAAAATTTGGAAGCTGTTACAGTACCACACAATATCCTAACATCATTAAAATTTTAAATATACTATTTAATATAATAATTTAGATTTATCATTCAAAATCATAATTATATTTTTTTTTTCTTACCAAATTAATCCCCAATTTTATAAAATACATGAATTTATTTAATAATCATAATAAAATTATAGTGACCAAAATGGCTCATAATTTCCAAACTTAAGCAAAACTATCTCACAAACAAAATTGTATTATATGTCGACACATCATCAAACCCTGATATTTATCTAAATTTGCCATTTTCCACATTTTCTTAATCATTTTAATTGATTTATTTGTACTATTATTTCACGTCTATAAATACTGTCACACGAGTGCAGGCCTAAAGCCTCCTTCTTGCTTCTTCTATAGGTGACTCAGTCGGAGCGAGCATAGAAAACAGCTCCCTGATCTCCATGGATCGCCTCTCCCCCAACTCAGCTAACAACAACCCCCTCACTCCCCTCGGCTTCATCGAGCGCACCGCCGCCGTCTACGGCGATCTTTCCTCCGTCATCTACAACACCACCGTTTTCACCTGGTCGGAAACCTACGGCCGCTGCCTCCGCCTCGCCTCCGCCCTCTCCGTCCATCTCCACATCTCTCTTTCCGACGTGGTCTCCGTCCTCGCCCCCAACACTCCCGCAATGTACGAGATGCATTTCGGCGTTCCGATGAGCGGCGCGATTCTCAACACCATCAACACCCGCCTAGATCCGAGAACCGTCTCCATTCTCCTCCTCCATTCTGAGTCCCGCATCCTCTTCGTCGACCCCCTCTCCCTCCCTCTCGCCCGATCCGCGATTTCCCTCCTCCCATCCGCCCATCCTGCCCCTCTCCTCATCCCGATCGAAGATCCGATCGAGGAAACCCCATCCCCCCTCTCCTCCTTCGATCTCACCTACGAAAAACTTCTAAACTTGGGCGATCCCGCCTTCCGCTGGATCCGCCCGAAGAGCGAATGGTCCCCGATGATCCTCAACTACACGTCCGGCACCACCTCCGCCCCCAAAGGCGTTGTCCACTGCCATCGCAACATCTTCCTTGGCTCCATGGATTCCCTCCACACCTGGGAAGTCCCCCCTCACCCGGTCTTCCTCTGGACCCTCCCCATGTTCCACGCCAACGGATGGTGCTCCCCCTGGGCCATGGCCGCCGTCGCCGGCGTCAACGTCTGCCTTCGCCGCTTCGATGGCCCGTCCGTCTTTGCCGCAATAGCTGACCACCGCGTTACCCATCTCTGTGGCGCCCCAGTGGTGCTCAACATGCTGGCGAATTGCCCCCCCGCCGCCCGCCGGCCCCTGCCCGGCCCCGTACAGATCATGACAGCTGGGGCCCCGCCGCCCGCCTCTGTGCTTTCCCGCACCGAGTCCCTTGGGTTCTCCGTCTACCACGGGTACGGCCTCACTGAGACCGCCGGGATTGTTGTATCCTGCGTCTGGAAGAGGGGGGCATGGGACCGGCTGCCCGAAGGGGAGCGGGCCAGGTTCAAGGCCAGGCAGGGGGTGAGGACGCTGGCTATGACCGCCATGGATGTAGTCAACCCGCGAACAGGCGAGAGCGTGCCGTGGGACGGGGCGGCAACAGGGGAGGTCGTCCTGCAAGGATACGTCATGCTGGGCTATCTCAAAGACGAGGACGCCACTGCCAGGGCCATCCGGGACGGCTGGTTCTACACCGGGGATGTCGCGGTCGTGCATCCCGATGGCTACCTCGAGATCAAGGATAGGGCCAAAGACGTGATCATCAGCGGCGGGGAGAACATCAGCAGCGTTGAGGTCGAATCTTTGATGTACCTGCACCCGGCGATCAATGAGGCCGCCGTCGTCGCCCGGCCCGACGACTTCTGGGGGGAGTCCCCATGTGCCTTCGTCGGGCTCAAGGAGGGGTTTGACCGTCCGACAGAGACAGAGCTCATCGCCTGGTGCAGGGACAAGATGCCCCACTATATGGTGCCCAAGTCAGTCATGTTTCTGCCGGAGCTGCCTAAGACGTCAACCGGAAAGCTACAGAAATACGTGCTTAGGGATTTGGCCAAGAAGATTGGGACGCCGACGCCCACATCTTCTGCCACGAAGACGACAAAACCGCTGCCCGATGGAAAGCGTGGTGGCCCGACCAGTAAGCTGTGA

Network for GWHGAAEX011938

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.27	AMP-binding	21	445	6.30E-80
PF13193.5	AMP-binding_C	454	530	9.00E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.250
SRP064423	SRR2545915	Juvenile tuber	11.040
SRP108465	SRR5643513	five period of Gastrodia elata	41.610
	SRR5643514	five period of Gastrodia elata	39.580
	SRR5643515	five period of Gastrodia elata	60.580
	SRR5643524	five period of Gastrodia elata	46.560
	SRR5643525	five period of Gastrodia elata	35.220
	SRR5643528	five period of Gastrodia elata	52.470
	SRR5643658	five period of Gastrodia elata	54.230
	SRR5643659	five period of Gastrodia elata	75.970
	SRR5643660	five period of Gastrodia elata	83.770
	SRR5643661	five period of Gastrodia elata	73.270
	SRR5643662	five period of Gastrodia elata	67.120
	SRR5643663	five period of Gastrodia elata	76.620
	SRR5643664	five period of Gastrodia elata	61.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	45.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	66.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.060
SRP279888	Gastro	Gastrodia elata tuber	40.75
	Juven	Juvenile tuber	43.13
	Mother_Gastro	Mother tuber of Gastrodia elata	81.30
	Mother_Juven	Mother tuber of Juvenile	78.61