Gene detail

Detail information of GWHGAAEX011939/evm.TU.scaffold_4.263

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|385330780\|ref\|YP_005884731.1\|	acyl-CoA synthetase [Marinobacter adhaerens HP15]
KOG	KOG1176	Acyl-CoA synthetase
nr	gi\|672111980\|ref\|XP_008803433.1\|	PREDICTED: probable acyl-activating enzyme 5, peroxisomal [Phoenix dactylifera]
Swissprot	tr\|Q9FFE9\|AAE6_ARATH	Probable acyl-activating enzyme 6
trEMBL	tr\|A0A096RNQ3\|A0A096RNQ3_MAIZE	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G105330_P01}
TAIR	AT5G16340	AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	5506665	5508762	+

Transcript Sequence
>GWHTAAEX011939 GCCTTATCCCTCTTTCTTTCTCCATCAGTGATTCAATTGGCGCGAACATAGGCAGCTAGCTCTCTAATCTCCATGGATCGCCTCTGTCCCAACTCCGCTAACAACATCTCCCTCACTCCTCTCGGCTTCATCGAGCGCACAGCCGCCGTCCACGGCGATCTTCCCTCCGTCATTTACAATACCACCGTTTTCACCTGGTCGGAAACCTACCGCCGCTGCCTCCGCCTCGCCTCCGCCCTATCCGTCCATCTCCGCATCTTCCCTTCCGACGTGGTCTCCGTCCTCGCCCCCAACACTCCCGCGATGTACGAGATGCATTTCGGCGTTCCGATGAGCGGCGCGATTCTCAACACCATCAACATCCGCCTAGATCCGAGAACCGTCTCCGTTCTCCTCCTCCATTCCGAGTCCCGCATCCTCTTCGTCGACCCCCTCTCCCTCCCTCTCGCCCGATCCGCGATTTCCCTACTCCCATCGGCCCATCCCGCCCCTCTCCTCATCCCGATCGAAGATCCGATCGAGGAAACCGCATCCTCCCTCTCCTCCTTTGATCTCACTTACGAAAAACTTTTAAACCTGGGGGATCCCGCCTTCCGCTGGATCCGCCCAAAGAGCGAATGGTCCCCGATGGTCCTCAACTACACATCCGGCACCACCGCCGCCCCCAAAGGCGTCGTCCATTGCCATCGCGGCATCTTTCTCGTCTCCATGGATTCCCTCCACATCTGGGAAGTTCCCCCTCAGCCGGTCTTCCTGTGGACCCTCCCCATGTTCCACGCCAACGGCTGGTGCTTCCCCTGGGCCATGGCAGCCGTTGCCGGCGCCAATGTCTGCCTTCGCCGCTTCGACGCCCCATCCATCTTCTCTGCCGTAGCTGAGCACCGTGTTACCCATCTCTGCGGCGCCCCGGTGGTGCTCAACATGCTGGCGAACTGTCCTCCCGCTGCTCGCCGGCCCCTGCCTGGGCCCGTACAGATCTTAACCGCCGGAGCCCCGCCGCCCGCCGTTGTGCTCTCCCACGCTGAGTCCCTTGGGTTCTCCGTCCACCACGGGTATGGCCTCACCGAGACCGCCGGGATCGTGGTGTCCTGCGCATGGAAAGGAGAGCCCTGGGATCGGCTGCCCGAAGGGGAGCGGGCGAGGATCAAGGCCAGGCAGGGGGTGAGGAGGTTAACCATGGCAGCGATGGACGTCATCAATCTGCAAACAGGCGAGAGCGTGCCATGGGACGGGGCGACAACCGGGGAAGTCGTTCTTCACGGTGGGCAGGTCATGCTTGGGTACCTCAAGGACGAGGACGCCACGGCCAAGGCAGTCCGAGATGGGTGGCTCTACACCGGCGACATTGGGGTCGTGCACCATGACGGCTACCTCGAGATCAAAGATAGGTCCAAGGACGTGATCATCAGCGGCGGGGAGAACATCAACAGTGTCGAGGTGGAGTCCCTGATGCACCTGCACCCAGCCATCAATGAGGTTGCCGTCGTCGCCCGGCCCGATGAGTTATGGGGGGAGTCCCCGTGCGCCTTCATCGGGCTGAAAGAGGAATCGGGCGGGCTGACGGAGGCCGAGGTCATCACGTGGTGCAGGAATAAGATGCCCCACTATATGGTACCCAAGACGGTTTTGTTTCTGCCGGAACTACCCAAGACGTCGACCGGGAAGATGCAAAAGTACGTGCTTAGGGATTTGGTCATGAAGATTGACCCGCCGCCCACGCCGTTCTTGACGGAGATGATGATGAAGGGAGCAATGAAACTCATAGGAGCAACTTGATGAATGTAAGTGCCAACTTAGGTACTGGGCTTTAAGCGATGAGATTACACATTCTTGTCAAACTGGTCGTCACGCCTAGTATTAGAGCTGTTAGTGCAGTCTTTTTGCTCCCAAAAGTCATTGGTAACTAAAGATGTCAACCCTACCCTATCAAACTTATTCATCTAGTTGCACAATGCAACATTTGTAAAATTTTATTAAGTACTTTCCAAATGCCAATTGGGTTATTGTTGCTT

Network for GWHGAAEX011939

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.27	AMP-binding	21	446	3.50E-82
PF13193.5	AMP-binding_C	455	531	1.00E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.140
SRP064423	SRR2545915	Juvenile tuber	0.130
SRP108465	SRR5643513	five period of Gastrodia elata	15.570
	SRR5643514	five period of Gastrodia elata	3.090
	SRR5643515	five period of Gastrodia elata	3.100
	SRR5643524	five period of Gastrodia elata	2.210
	SRR5643525	five period of Gastrodia elata	1.650
	SRR5643528	five period of Gastrodia elata	1.180
	SRR5643658	five period of Gastrodia elata	1.040
	SRR5643659	five period of Gastrodia elata	0.640
	SRR5643660	five period of Gastrodia elata	0.520
	SRR5643661	five period of Gastrodia elata	0.670
	SRR5643662	five period of Gastrodia elata	1.180
	SRR5643663	five period of Gastrodia elata	0.640
	SRR5643664	five period of Gastrodia elata	0.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	54.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.930
SRP279888	Gastro	Gastrodia elata tuber	0.59
	Juven	Juvenile tuber	40.39
	Mother_Gastro	Mother tuber of Gastrodia elata	4.81
	Mother_Juven	Mother tuber of Juvenile	3.34