Detail information of GWHGAAEX011942/evm.TU.scaffold_4.267


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG01193.00E-41Splicing factor 1/branch point binding protein (RRM superfamily)
nrgi|695031535|ref|XP_009403287.1|9.68E-66PREDICTED: mucin-2 isoform X3 [Musa acuminata subsp. malaccensis]
trEMBLtr|M0T3W0|M0T3W0_MUSAM9.00E-67Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P03620_001}
TAIRAT3G329403.00E-41RNA-binding KH domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001155333265551525+
Transcript Sequence

Network for GWHGAAEX011942

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.500
SRR2545915Juvenile tuber13.330
SRP108465SRR5643513five period of Gastrodia elata18.000
SRR5643514five period of Gastrodia elata19.280
SRR5643515five period of Gastrodia elata20.090
SRR5643524five period of Gastrodia elata18.810
SRR5643525five period of Gastrodia elata28.220
SRR5643528five period of Gastrodia elata22.240
SRR5643658five period of Gastrodia elata22.430
SRR5643659five period of Gastrodia elata28.030
SRR5643660five period of Gastrodia elata33.900
SRR5643661five period of Gastrodia elata28.910
SRR5643662five period of Gastrodia elata36.670
SRR5643663five period of Gastrodia elata33.940
SRR5643664five period of Gastrodia elata32.140
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.210
SRR6049655Rhizomagastrodiae_C368-T10_good_139.360
SRR6049656Rhizomagastrodiae_C368-T07_good_120.680
SRR6049657Rhizomagastrodiae_C368-T07_good_117.150
SRR6049658Rhizomagastrodiae_C368-T04_good_119.070
SRR6049659Rhizomagastrodiae_C368-T04_good_118.720
SRR6049660Rhizomagastrodiae_C368-T01_good_119.970
SRR6049661Rhizomagastrodiae_C368-T04_good_119.230
SRR6049662Rhizomagastrodiae_C368-T01_good_118.720
SRR6049663Rhizomagastrodiae_C368-T01_good_120.600
SRR6049664Rhizomagastrodiae_C368-T10_good_122.000
SRR6049665Rhizomagastrodiae_C368-T10_good_122.000
SRP279888GastroGastrodia elata tuber 33.12
JuvenJuvenile tuber27.99
Mother_GastroMother tuber of Gastrodia elata 32.90
Mother_JuvenMother tuber of Juvenile 32.38