Detail information of GWHGAAEX011943/evm.TU.scaffold_4.269
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-74 | FOG: PPR repeat |
| nr | gi|672114963|ref|XP_008779274.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LFC5|PP360_ARATH | 8.00E-75 | Pentatricopeptide repeat-containing protein At5g01110 |
| trEMBL | tr|M0SAJ0|M0SAJ0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P00220_001} |
| TAIR | AT5G01110 | 3.00E-74 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 5560203 | 5592841 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011943
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 195 | 241 | 2.40E-09 |
| PF12854.6 | PPR_1 | 263 | 293 | 3.50E-07 |
| PF13041.5 | PPR_2 | 302 | 350 | 1.50E-13 |
| PF13812.5 | PPR_3 | 359 | 402 | 0.0031 |
| PF12854.6 | PPR_1 | 438 | 470 | 2.60E-07 |
| PF13041.5 | PPR_2 | 476 | 525 | 6.70E-14 |
| PF13041.5 | PPR_2 | 546 | 593 | 3.00E-10 |
| PF13041.5 | PPR_2 | 616 | 665 | 8.90E-14 |
| PF13041.5 | PPR_2 | 686 | 726 | 7.80E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.830 |
| SRR2545915 | Juvenile tuber | 5.690 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.460 |
| SRR5643514 | five period of Gastrodia elata | 1.470 | |
| SRR5643515 | five period of Gastrodia elata | 1.320 | |
| SRR5643524 | five period of Gastrodia elata | 1.140 | |
| SRR5643525 | five period of Gastrodia elata | 1.070 | |
| SRR5643528 | five period of Gastrodia elata | 0.520 | |
| SRR5643658 | five period of Gastrodia elata | 0.200 | |
| SRR5643659 | five period of Gastrodia elata | 2.970 | |
| SRR5643660 | five period of Gastrodia elata | 3.750 | |
| SRR5643661 | five period of Gastrodia elata | 2.550 | |
| SRR5643662 | five period of Gastrodia elata | 1.940 | |
| SRR5643663 | five period of Gastrodia elata | 2.560 | |
| SRR5643664 | five period of Gastrodia elata | 2.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.31 |
| Juven | Juvenile tuber | 3.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.82 | |
| Mother_Juven | Mother tuber of Juvenile | 1.33 |