Gene detail

Detail information of GWHGAAEX011946/evm.TU.scaffold_4.272

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	6.00E-163	FOG: PPR repeat
nr	gi\|743852133\|ref\|XP_010940317.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At1g50270-like [Elaeis guineensis]
Swissprot	tr\|Q9SX45\|PPR75_ARATH	2.00E-163	Pentatricopeptide repeat-containing protein At1g50270
trEMBL	tr\|A5BZX8\|A5BZX8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN77435.1}
TAIR	AT1G50270	6.00E-163	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	5696646	5698972	+

Transcript Sequence
>GWHTAAEX011946 CAATAAATAACAAGCATATATGAATGGAGATGGAAGTGAAAAATAGTAACAACAACTAAGATTTTATCTATTATTCCAAGTTTTGTTGCCGGAATTCACTGCCTAACCAAAACGGCAAAGAAACAAAGACCCACTCCGATTCATTCAAATCTCCACCTTCAAGCCTCAACTGGATCTTGCAATACACAGTTTGAAAGTCATAATTAATCTGATAAACCGCCGTTCTTCATGGACTGCAATGCCTGTGAATCTCTTCTCGGTGCTCAGATCATGCACAACTCTTCCCCTTCTGAAGCAAATCCACGCTCTCATCATCACCATCGGACTCTCCTGCGATGCCAGCAGTCTCCTCTCCAGAATCCTCCGTTCCGCCGCCCTCTCTCTTCCCGGAGACATCCACTACGCCTTTCTCCTCTTCCATCGAATCCACCGCCCAGACATCTCGATCTGGAATCTTATGCTCCAAGCCCCAGCCCTTCGCTCTCAGCCCCATTTAGCCTCCGCTCATTTCACCCAAATGCTCCGAAGAGGGGCAAACCCCAACGAACACACCTTCCCTGCTATTCTCAGAATCCTCGCGAACTCTCGTTCCCGAAATCCGATTCAGATTCACGCCCAAATTCTTAAACTAGGGCTGGAAGCCGATATCTTTGTTCAGAATTCTCTCCTGTCGTGTTACTCTAAGACCCCCGACTTGAACTCCGCGCGCAAGCTGTTCGACGAAATGCCTCGCAGGGACGCCGTCTCTTGGAACGCCATGGTTCATGGGCATGTAAAGAGCCATCTTCCCGAACTAGGTCTGGATTACTTTATTACAATGAGATCTTCCTCAGGCATCCAAATTGATGAAGAGGTGGTTGTCAGCGCGCTCAATGGCTGCACGATGGCTGGAAATATCTGGCTTGCAACAGGCATCCAAGCCTTTTATGTGGAATCCGGCAGAGTGAAAAGAGACGTCTTTGTCGACTCCGCGCTCGTGGATATGTACGCGAAGTTCGGCTGCTGTTCTGATGCCTGCAAAGTGTTTGATGAAATGCCTCAAAAAAACGTTGTTTCCTGGACCTCATTGATTTCTGGCTACGTCCATTGCAGCAAATTCAGAGAAGCTTTATCCGCCTTCCGCGGCATGCTTGTTGAAGGCCCTCGTCCGAATCAGATGACTCTCTCCAGCATTTTTGCTGCCTGTGCTCAGCTGGGAGCACTTGAACAAGGAAGATGGGCTCACACCTACATGGTTCGAATCGGCATAGAACTGAACTCTTTCGTCGGAACGGCGTTAATTGATATGTATGCAAAATGCGGACGAATCGATGAAGCCTTTTCTGTATTTTGTAGATTGCCGGACAAAAACGTGTATTCTTGGACTGCCCTGATTAATGGGTTGGCACTGCAGGGGATTGGCTCGGAGTGTCTTAATCTCTTCTCTCAAATGCTGCAGGAAGGAATTCAGCCCAATGAGGTCACTTTCTTGGGCGTTCTTTGTGCTTGCTCTCATGGAGGACTTGTGCAGGAGGGTAAAAAGCACTTTGACGGAATGCTGACAGTGTTTGGATTGGAGCCTAAGTTGGAGCATTATGGATGTATGGTGGATCTTTTCGGCAGAGCAGGGTGTTTGGAAGAGGCACTGCGTTTCATAGAAGGAATGCCTATGGAACCCAGTGTTAGTATATGGGGAGCATTATTTCGTGCCTGCTTGATTCATGGAGATTTAGTGCTGGGAGAGAAAGTGGGAAAGCATATAGTGGGAATGAAGCCAGAGAAGAGCTGTGGCTATTTGCTTCTTGCTAATATGTATTCCGTTACAAAGAGGTGGGAGGAGGCCGCTGGCATGAGGGTGGCGATGATGGGGAGAGCGGTGGAGAAAGCTGCGGGCTGCAGTTGGATGGAGCTCAATGGAGTCTTGCATGAGTTTCTTGCCTCTGATGGCTCTCATACTGAAGCTGAGGTTATATATGAAACTTTAGAAGGACTGACTGTGCTGATGAAATTGCTAAACTATGTGTTGTGCATTGAGGAGGAGATTATTTGAAGCTTAAATTCTGAGTGTGGTTTGGGGTCTCAATTGCAACAATTATTTAAAAAATTAGATGTGCTCAAAGCTTATGGTGCTATTCGGGGATCCAGTTGTGTGATTGTTAAGCCCCGAAATTGAATCTTCGCTGAGAAAAGCGATTGGCATCATTAGCTCTGACAACAAGTAATTTTTTTATCATTATTTTTTCGGAAAGGCACAAAAAGGTGGTTTTTTATTTTCTTACTTTATTGATTGTAAATGCAAATTGTAAAATGAATTTTACATGTTTTTATAAAACATAAATACTTTTTCC

Network for GWHGAAEX011946

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	141	166	0.032
PF01535.19	PPR	169	197	0.0089
PF13041.5	PPR_2	269	317	3.20E-08
PF13041.5	PPR_2	370	417	6.80E-09
PF01535.19	PPR	445	470	0.016

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.360
SRP064423	SRR2545915	Juvenile tuber	1.020
SRP108465	SRR5643513	five period of Gastrodia elata	1.960
	SRR5643514	five period of Gastrodia elata	2.010
	SRR5643515	five period of Gastrodia elata	1.640
	SRR5643524	five period of Gastrodia elata	1.940
	SRR5643525	five period of Gastrodia elata	1.210
	SRR5643528	five period of Gastrodia elata	1.040
	SRR5643658	five period of Gastrodia elata	0.480
	SRR5643659	five period of Gastrodia elata	2.260
	SRR5643660	five period of Gastrodia elata	2.070
	SRR5643661	five period of Gastrodia elata	2.780
	SRR5643662	five period of Gastrodia elata	2.570
	SRR5643663	five period of Gastrodia elata	2.000
	SRR5643664	five period of Gastrodia elata	2.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.470
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.680
SRP279888	Gastro	Gastrodia elata tuber	2.20
	Juven	Juvenile tuber	0.96
	Mother_Gastro	Mother tuber of Gastrodia elata	1.04
	Mother_Juven	Mother tuber of Juvenile	0.68