Gene detail

Detail information of GWHGAAEX011951/evm.TU.scaffold_4.277

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|557694095\|ref\|YP_008797149.1\|	1.00E-71	conserved hypothetical protein [Candidatus Caldiarchaeum subterraneum]
KOG	KOG2292	0	Oligosaccharyltransferase, STT3 subunit
nr	gi\|359491801\|ref\|XP_002269119.2\|	0	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Vitis vinifera]
Swissprot	tr\|Q9FX21\|STT3B_ARATH	0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B
trEMBL	tr\|F6HVR5\|F6HVR5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58778.1}
TAIR	AT1G34130	0	staurosporin and temperature sensitive 3-like b

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	5758783	5796801	-

Transcript Sequence
>GWHTAAEX011951 TGCTCGCCCCAACCTGTATCCGCCCTCCATGGGAACTAAAACCGGATCCTCTCTTCCTGTGTCGCCGCCTCCCTCGTCCGCCACTTTCACCTCCCCGCTTCCGTCCCTCAATTCCCTAAAATTGAAAACAAAGCAGCAGGAGCTCTTGATCCGCGTCTCCATCCTCGCTCTCGTCTATGTGCTCGCCTTTGCCATCCGCTTATTCAGTGTCCTCCGCTACGAAAGCATGATCCATGAGTTTGATCCATACTTCAATTACCGCACCACTCTTTACCTAACCGAAAAGGGCTTTTACGAGTTCTGGAATTGGTTCGATTCTGAGAGCTGGTACCCTCTTGGCCGCATCATAGGCGGAACGCTCTACCCTGGTCTCATGGTCACCGCCGCCCTCATCTACTGGACTCTTCGATTCCTAACATTCGCTGTCCACATCCGCGAGGTTTGCGTCCTCACTGCTCCATTTTTCGCCTCCAATACAACTATCGTCGCTTACTTTTTCGGGAAGGAGATATGGGATTCCGGCGCTGGTTTGGTGGCGGCTGCCCTTATTGCAGTCTGCCCTGGCTATATCTCGAGATCCGTTGCTGGTTCTTATGATAACGAGGGGGTTGCCATTTTTGCGCTTCTTCTGACGTTTTACCTATTTGTCAAAGCAGTCAACACCGGATCGCTGGCTTGGGCACTGGCATCTGCTTTTGGATACTTCTATATGGTATCAGCCTGGGGCGGATACGTGTTTATAATCAATTTAGTGCCGCTCTATGTACTGGTTTTACTGGTGACCGGGAGGTATTCGATGAGGCTGTACATTGCATACAACTGCATGTATGTGTTAGGGATGCTGCTCGCCATGCAGATTAGGTTTGTAGGTTTCCAGCATGTGCAGTCTGGGGAGCATATGGCTGCAATGGGGGTGTTTTTCTTGCTCCAGGTATTTTACTTTCTTGACTGGGTAAAGTTCACGCTAAATGATCCCAAGTTATTTCATTCCTTCTTGAGGATAGCATTAACGTGCGCCATAAGTGTGGGTGCTCTTGCCCTTGGAGTTGGCATGGCTACAGGATACATCTCTCCTTGGACTGGTCGTTTTTATTCTTTGCTTGACCCAACATATGCAAAGGACCATATACCTATTATAGCATCAGTCTCGGAGCATCAACCAACAGCATGGTCTTCCTTCATGTTTGACTTTCATATTCTTCTTTTTTTATTTCCTGCGGGGCTATATTTTTGTTTTAAGCGGTTATCAGATGCCACTATTTTTATTGTTATGTATGGTCTTACGAGCATGTATTTTGCTGGTGTAATGGTTCGCTTAATACTTGTTGCTGCACCAGCTGTATGCCTTATTAGCTCTATTGCGGTCTCTGCCACCTTAAAAAATTTGACAATGTTAATTCGTGCAAAGAATAATACTCATATTGGATCCAGCAAAGGGACAGCTAGCATGAAGGCTTCATCTAGGGCTTCATCTGTGGACCAACCTCTGCCTTACCAAAGAAATGCGGCTATTACTTTGTTGTTCGGTGCTTTTTATCTGCTAAGCAGATATGCCATTCATTGCACTTGGGTCACATCCGAGGCCTATTCTTCTCCTTCCATCGTCTTGGCTGCAAGGAGTGCCCATGGTGGCAGGGTCATTTTTGATGATTATCGTGAAGCATATTTTTGGCTCAGAAAAAATACACCCCCTGATGCCAAAATCATGTCCTGGTGGGACTATGGATATCAGATTACTGCAATGGGAAACAGAACTGTGATTGTTGATAATAATACTTGGAATAACACTCATATTGCTACAGTTGGTAGAGCAATGTCATCATATGAAGACGAAGCATATGAAATAATGAGGTCCTTGGATGTGGATTATGTACTAGTTGTATTTGGAGGTGTTACCGGTTATTCTTCAGATGACATTAACAAATTCTTATGGATGGTACGCATTGGTGGCGGGGTTTTTCCTGTCATAAAAGAGCCTGATTATCTTGTTAATGGTGAATATCGAGTTGACAAGGGGGCTGCACCAAAAATGTTGAACTGCCTCATGTACAAACTTTCTTACTATCGGTTTGGAGAGATCACAACAGAGTATGGGAAGCCTCCCGGGTATGATCGTGCAAGGGGGGTGGAGATTGGGAATAAAGAGGTGGAACTCGAGCATTTGGAGGAGGCCTTCACAACCTCAAATTGGATAATCCGAATTTACAAAGTGAAGCCTCCCAACAATCGGTGGTGAAAAGCGCCTCTCTTGTTTGGCTGCTCATCCACACAACGGAAGCCATTAGTTACCATCAGGCAGCTTTGATTTCTTTATATGGGAAAACTGTTTTTTTTCCCCTTTAAAACGAGGAGATTTTCCTGTTAAATTATGGCAACGGCTCAGATTTTCTGCTTTTGAGTTTTTGATATTTATAAAAATAAAAATAAATGAAATTATCAGCTGAATCTCTAAAAGTCCTTTTAGGTGAAACAGCCTAATAGCCTGAATTTGAGTAAGATTTCACTATTAAAAATGTTAGAAACAAATAGAATGCATCTTTGTTTGCAATTTCATGTACTCTTTAAGCACTCAAGTATGAAATTACATGATGGAAAGCAAAGGAGTCGTTCCATTTTTTCTTTGCTAGTTATAATTCAGAACTGAGACCTTCGCCTGCGGCCATCCTTGAATATAGACAAAAATGAGCTGCTTGCCAGGGTTCAAAACCTTGATCCATTCTGGAAAGCCATATATGTTCTTCTCTTCTGTAGGTGAGAGCCCCCAAAGAGCGCCTGAAAGGTTTTCTATACCCAACTTCAGATTGCTTATGGGCTTTCCACTTTTGTTTATCACTGTCACTTTGTGTTTATAGTACTCCACTCCATTGTCTGACCATGAACTTGTAATTGAATGGATGAACACTATTGGATTCTCTG

Network for GWHGAAEX011951

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02516.13	STT3	43	521	1.40E-119

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT66

KEGG pathway

KO	Enzyme	pathway	mapID
K07151	STT3	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513
		Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006486	Biological Process	protein glycosylation
GO:0004576	Molecular Function	oligosaccharyl transferase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.430
SRP064423	SRR2545915	Juvenile tuber	48.200
SRP108465	SRR5643513	five period of Gastrodia elata	58.950
	SRR5643514	five period of Gastrodia elata	58.040
	SRR5643515	five period of Gastrodia elata	53.990
	SRR5643524	five period of Gastrodia elata	66.800
	SRR5643525	five period of Gastrodia elata	32.010
	SRR5643528	five period of Gastrodia elata	32.690
	SRR5643658	five period of Gastrodia elata	29.590
	SRR5643659	five period of Gastrodia elata	48.750
	SRR5643660	five period of Gastrodia elata	45.530
	SRR5643661	five period of Gastrodia elata	52.150
	SRR5643662	five period of Gastrodia elata	38.780
	SRR5643663	five period of Gastrodia elata	46.380
	SRR5643664	five period of Gastrodia elata	33.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	57.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	76.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	63.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	50.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	49.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	78.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	65.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	72.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	72.310
SRP279888	Gastro	Gastrodia elata tuber	42.82
	Juven	Juvenile tuber	69.19
	Mother_Gastro	Mother tuber of Gastrodia elata	37.25
	Mother_Juven	Mother tuber of Juvenile	68.30