Gene detail

Detail information of GWHGAAEX011954/evm.TU.scaffold_4.280

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672111892\|ref\|XP_008802991.1\|	5.06E-29	PREDICTED: uncharacterized protein LOC103716661 isoform X2 [Phoenix dactylifera]
trEMBL	tr\|M0U6J6\|M0U6J6_MUSAM	1.00E-27	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP05340_001}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	5827001	5828483	+

Transcript Sequence
>GWHTAAEX011954 TCAAAACTGCAATCTCCATAGCCCTCTTCAGAGATTTCTCCTCCTCAATCTTATTTCCAGATTCGCAATGCTCCCGTAACTTCGCATCCGAGCGTCTCCAGATCTGTCAATCGCCTCTCCCTTTCTCCTCGAATTTATTATTCCTCCGATGAATGCGATGCTCGATCTGCTCCGTGTTCCGGGTAAGAAAGCATTTTCTGCATCGAAGATCGCCTTCCTCTACGCAGGAATACCCTTCGTTGGAATCCTCTCATGGCTAGTGGCTCCAGGGGTCTTTACCCTTCTCGCCTCTGCCGTCCCCAACCTTTGGATCTGCATCCGCTCTTCGGCTGCTCCTCCTTACCTCTTCATCGTCGTTAACTTCATCATTCTCACCATTTGGAAGCTCTCAGAAAACCGATCTGAGCGGGAAAGCGCTCCTGACGCCCATCCCGGCTCCGTTTCCGTCCGATCTCGAGATCTCGCTTCCTCGCCCGCTATCTGCCCTCTCAAAAAGTCTCCTCCAGAGGATCTTAGTGATAAAACCGCTCCTATCCCCGATGGAAGTATCGTTTTACCGGATTCTGAATCGTCCTGCATCACAGCAGAGTCTGTAGAGAAATCAACAGCTTCTTCCAACTCTCCAGAATCGGCATTGAAGGCTGAGGACGAGCCAGAGGTAAACGATTCTCTGGAAGATACGTGGAATGCCATCATGGTGAAGAGCAGCAGATCCGCAAGTCCTCCGCCGCAGGCGATGGCAAAAAACGAGCAGTCTCAAAGCAACGACGAGATGAACCGATTGTTTGATGATTTCATAAAGAAGAACTATGATCAGATTAGGTTGAGGAGGAATCAGCCTTCTCGCATCAAGTGATCAACACTCGGTTTCTCTTTTTTGTGTGTGGGTGATGGATTGGCGTCGTTTTGATCGTTTCGGTGGTGAATTTCTCATCCTTTCTTCGTTTTTTTTATTATTTGAAATTAGATAAACAGGTAATGGGGATTTAGAATTTGATTTTTGACTGGTGGTATGGGAATATTTGAAGCTGTTTTCAGTGCAATACTGTACAAAGCAAAGCATTTCCTTTCGTAACGTCGATTGCTTAATGTAAAATTGGGTTGATTTAATCGCAAGATTGCAATTAATGAGTGTTTGAGAAAATGATGGGTGCCTGGCGGGAATCGGACAAGATGGGTGATTGGGGAAGGACGCACAAAAGGAGAAAGGAGTGACTCCGATATTGGGAAGGACCGCAAGTACATTCTGCGTAATAATCTGTCCCTGTGAAGACCCCAAAAAAGATAAGATTTTTACACACAAGGCACCTAAAATCCTGAAAAATATATAATACAGGTAACTCAATGTATTCTCCTCCGATTCTTTCTCTTTTTCTTTTTTTCTCTCCGCCACTTTTTCTTTTCCGAACTTTTTGAGCTTTTTATTTTATTTTGATTTCTTAGCGCTGTGAGCTTCTGCTCCGTTTTTGGTCCTAATTTCTTT

Network for GWHGAAEX011954

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14364.5	DUF4408	51	81	4.40E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.850
SRP064423	SRR2545915	Juvenile tuber	3.430
SRP108465	SRR5643513	five period of Gastrodia elata	8.830
	SRR5643514	five period of Gastrodia elata	7.930
	SRR5643515	five period of Gastrodia elata	7.250
	SRR5643524	five period of Gastrodia elata	6.170
	SRR5643525	five period of Gastrodia elata	3.330
	SRR5643528	five period of Gastrodia elata	2.970
	SRR5643658	five period of Gastrodia elata	8.150
	SRR5643659	five period of Gastrodia elata	3.180
	SRR5643660	five period of Gastrodia elata	1.780
	SRR5643661	five period of Gastrodia elata	3.980
	SRR5643662	five period of Gastrodia elata	2.370
	SRR5643663	five period of Gastrodia elata	1.590
	SRR5643664	five period of Gastrodia elata	1.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.240
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.410
SRP279888	Gastro	Gastrodia elata tuber	2.08
	Juven	Juvenile tuber	1.86
	Mother_Gastro	Mother tuber of Gastrodia elata	4.87
	Mother_Juven	Mother tuber of Juvenile	0.74