Detail information of GWHGAAEX011957/evm.TU.scaffold_4.283
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|37519698|ref|NP_923075.1| | 0 | oligopeptidase [Gloeobacter violaceus PCC 7421] |
| KOG | KOG2237 | 0 | Predicted serine protease |
| nr | gi|743834624|ref|XP_010935585.1| | 0 | PREDICTED: prolyl endopeptidase-like [Elaeis guineensis] |
| trEMBL | tr|K3XVG0|K3XVG0_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si005917m} |
| TAIR | AT1G50380 | 0 | Prolyl oligopeptidase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 5939377 | 5999287 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011957
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02897.14 | Peptidase_S9_N | 4 | 417 | 1.50E-100 |
| PF00326.20 | Peptidase_S9 | 483 | 699 | 1.30E-69 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0008236 | Molecular Function | serine-type peptidase activity |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
| GO:0070008 | Molecular Function | serine-type exopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.490 |
| SRR2545915 | Juvenile tuber | 24.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 47.430 |
| SRR5643514 | five period of Gastrodia elata | 68.030 | |
| SRR5643515 | five period of Gastrodia elata | 63.910 | |
| SRR5643524 | five period of Gastrodia elata | 69.420 | |
| SRR5643525 | five period of Gastrodia elata | 39.330 | |
| SRR5643528 | five period of Gastrodia elata | 55.610 | |
| SRR5643658 | five period of Gastrodia elata | 47.620 | |
| SRR5643659 | five period of Gastrodia elata | 21.030 | |
| SRR5643660 | five period of Gastrodia elata | 19.340 | |
| SRR5643661 | five period of Gastrodia elata | 17.480 | |
| SRR5643662 | five period of Gastrodia elata | 17.750 | |
| SRR5643663 | five period of Gastrodia elata | 21.640 | |
| SRR5643664 | five period of Gastrodia elata | 14.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 56.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 69.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 66.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 43.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 58.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 59.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 48.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 57.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 76.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 73.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 104.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 104.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.33 |
| Juven | Juvenile tuber | 25.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 35.59 | |
| Mother_Juven | Mother tuber of Juvenile | 34.82 |